Job Description P39377 Confidence 100.00% Date Thu Jan 5 12:00:10 GMT 2012 Rank 53 Aligned Residues 338 % Identity 15% Template c3la4A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:urease; PDBTitle: crystal structure of the first plant urease from jack bean (canavalia2 ensiformis) Resolution 2.05 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.											.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	G	F	T	L	L	Q	G	A	H	L	Y	A	P	E	D	R	G	I	C	D	V	L	V	A	N	G	K	I	I	A	V	A	S	N	.	.	.	.	.	.	.	.	.	.	I	P	S	D	I	V	P	N	C	T	V	V	D	L	S	G	Q	I	L	C	P	G	F	I	D	Q	H	V	H	L	I	G	G	G
Query Conservation																																						.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.																																		.
Template Conservation																																																																																	.
Template Sequence		I	S	L	D	T	V	I	T	N	A	V	I	I	D	Y	T	G	I	I	K	A	D	I	G	I	K	D	G	L	I	A	S	I	G	K	A	G	N	P	D	I	M	N	G	V	F	S	N	M	I	I	G	A	N	T	E	V	I	A	G	E	G	L	I	V	T	A	G	A	I	D	C	H	V	H	Y	I	C	P	.
Template Known Secondary structure		G	S		S											T	T											T	T									B		T	T	T		S	S			T	T	S	B			T	T							T	T															S		T	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.								.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.
Query Sequence		G	E	A	G	P	T	T	R	T	P	E	V	A	L	S	R	L	T	E	A	G	V	T	S	V	V	G	L	L	.	.	.	.	.	.	.	G	T	D	S	I	S	R	H	P	E	S	L	L	A	K	T	R	A	L	N	E	E	G	I	S	A	W	M	L	T	G	A	Y	H	V	P	S	R	T	I	T	G	S	V
Query Conservation																															.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	Q	L	V	Y	E	A	I	S	S	G	I	T	T	L	V	G	G	G	T	G	P	A	A	G	T	R	A	T	T	C	T	P	S	P	T	Q	M	R	L	M	L	Q	S	T	D	D	L	P	L	N	F	G	F	T	G	K	G	S	S	S	K	P	D	E	L	H	E	I	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.										T									S	S	S							S	S				S											T	T	T	S	S	S					B						S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	D	V	A	I	I	D	R	V	I	G	V	K	C	A	I	S	D	H	R	S	A	A	P	D	V	Y	H	L	A	N	M	A	A	E	S	R	V	G	G	L	L	G	G	K	P	G	V	T	V	F	H	M	G	D	S	K	K	A	L	Q	P	I	Y	D	L	L	E	N	C	D	V	P	I	S	K	L	L	P
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.
Template Sequence		K	A	G	A	M	G	.	.	.	.	.	.	.	.	.	.	.	L	L	H	E	D	W	G	S	T	P	A	A	I	D	N	C	L	T	I	A	E	H	H	.	.	.	.	.	.	.	D	I	Q	I	N	I	H	T	D	T	L	N	E	A	G	F	V	E	H	S	I	A	A	F	K	G	R	T	I	H	T	Y	H
Template Known Secondary structure				T		S	B	.	.	.	.	.	.	.	.	.	.	.			B	T	T	T																		.	.	.	.	.	.	.	T		B				B			T	T		S	S											T	T						T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.
Template SS confidence
		483	.	.	.	.	.												.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.								.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.																																		.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	H	V	N	R	N	V	P	L	F	E	Q	A	L	E	F	A	R	K	G	G	T	I	D	I	T	S	S	I	D	E	P	V	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	G	I	A	R	A	V	Q	A	G	I
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	E	G	A	G	G	G	H	A	P	D	I	I	K	V	C	G	I	K	N	V	L	P	S	S	T	N	P	T	R	P	L	T	S	N	T	I	D	E	H	L	D	M	L	M	V	H	H	L	D	R	E	I	P	E	D	L	A	F	A	H	S	R	I	R	K	K	T	I	A	A	E	D	V	L	N	D	I	G	A
Template Known Secondary structure		T	T	S	T	T	S		S	T	T	T	G	G	G	G	G	G		T	T							S	T	T	S	S		B	T	T																T	T	S											S														T	T	S
Template Predicted Secondary structure
Template SS confidence
		546	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		P	L	A	R	V	T	L	S	S	D	G	N	G	S	Q	P	F	F	D	D	E	G	N	L	T	H	I	G	V	A	G	F	E	T	L	L	E	T	V	Q	V	L	V	K	D	Y	D	F	S	I	S	D	A	L	R	P	L	T	S	S	V	A	G	F	L	N	L	T	G	K	.	G	E	I	L	P	G	N	D	A
Query Conservation																																																																								.
Alig confidence		.	.	.																																																																				.
Template Conservation		.	.	.
Template Sequence		.	.	.	I	S	I	I	S	S	D	S	Q	A	M	G	R	V	G	E	V	I	S	R	T	W	Q	T	A	D	K	M	K	A	Q	T	G	P	L	K	C	D	S	S	D	N	D	N	F	R	I	R	R	Y	I	A	K	Y	T	I	N	P	A	I	A	N	G	F	S	Q	Y	V	G	S	V	E	V	G	K	L	A
Template Known Secondary structure		.	.	.	S							T	T	S	S	S		G	G	G																		S		T	T	S		S	S											T	T	T	T								T		T	T	T	S	S	S	S		T	T	S	B
Template Predicted Secondary structure		.	.	.
Template SS confidence
					627	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.
		355	.	.	.	.	360	.	.				.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure										.	.	.
Query SS confidence										.	.	.
Query Sequence		D	L	L	V	M	T	P	E	.	.	.	L	R	I	E	Q	V	Y	A	R	G	K	L	M	V
Query Conservation										.	.	.
Alig confidence										.	.	.
Template Conservation
Template Sequence		D	L	V	M	W	K	P	S	F	F	G	T	K	P	E	M	V	I	K	G	G	M	V	A	W
Template Known Secondary structure								G	G	G	T	T	T			S					T	T
Template Predicted Secondary structure
Template SS confidence
		704	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions