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Job DescriptionP39377
Confidence100.00%DateThu Jan 5 12:00:10 GMT 2012
Rank23Aligned Residues352
% Identity17%Templatec3hpaB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:amidohydrolase; PDBTitle: crystal structure of an amidohydrolase gi:44264246 from an2 evironmental sample of sargasso sea
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910........ .20.. .......30.........40.........50.........60.........70.........80...
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Query Sequence  FTLLQGAHLY. . . APED. . RGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPGFIDQHVHLIGGGGEAGPTTR
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Template Sequence  TLLVKHADVLVTMDDTRRELRDAGLYIEDNRIVAVGPSAELP. ETADEVLDLRGHLVIPGLVNTHHHMYQSLTRAVPAAQ
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TT

TTGGGS
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   30.........40.........50.........60.........70. ........80.........90.........100........
 
   84. ....90.........100.........110.........120.........130........
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Query Sequence  TP. . . . . . . . . . . . . . . . . . . . . . . . . EVALSRLTEAGVTSVVGLLGTDSISRHPESLLAKTRALNEEGISAWMLTGAYH
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Template Sequence  NAELFGWLTNLYKIWAHLTPEMIEVSTLTAMAELLQSGCTTSSDHLYIYPNGSRLDDSIGAAQRIGMR. . FHASRGAMSE
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TT

TTT

B



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   109110.........120.........130.........140.........150.........160.........170...... ...180......
 
   139140.........150.........160.........170.........180.........190.........200.........210........
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Query Sequence  VPSRTITGSVEKDVAIIDRVIGVKCAISDHRSAAPDVYHLANMAAESRVGGLLGGKPGVTVFHMGDSKKALQPIYDLLEN
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Template Sequence  PDILRDTQRLIETYHDEGRYAMLRVVVAPCSPFSVSRDLMRDAAVLAREYGV. . . . SLHTHLAENVNDIAYTPAEYAEDL
Template Known Secondary structure 


STT
SS
TTTS
T
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   203......210.........220.........230.........240.........250.... .....260.........270........
 
   219220.........230.........240.........250.........260... ......270.........280.........290.......
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Query Sequence  CDVPISKLLPTHVNRNVPLFEQALEFARKGGTIDITSSIDEPVAP. AEGIARAVQAGIPLARVTLSSDGNGSQPFFDDEG
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Template Sequence  GWVGHDVWHAHCVQLDDA. . . GIGLFARTGTGVAHCPCSNMRLASGIAPVKKMRLAGVPVGLGVDGSASNDGAQMVAE. .
Template Known Secondary structure  T

STT
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TT




T





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   286...290.........300... ......310.........320.........330.........340.........350.........360
 
   298.300.........310.........320.........330.........340.........350.........360..
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Query Sequence  NLTHIGVAGFETLLETVQVLVKDYDFSISDALRPLTSSVAGFLNLTGKGEILPGNDADLLVMTPE. . . . . . . . . . . . . . .
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Template Sequence  . . . . . . . . . VRQALLLQRVGFGPDAMTAREALEIATLGGAKVLNRDDIGALKPGMAADFAAFDLRQPLFAGALHDPVAAL
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TTSS
TT
SSSSS
STTSB

TTSGGGTT
TTS
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   361........370.........380.........390.........400.........410.........420.........430.
 
   363......370.........380.
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Query Sequence  . . . . . LRIEQVYARGKLMVKDGKA
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Template Sequence  VFCAPSQTAYTVVNGKVVVREGRL
Template Known Secondary structure  SS



STTTT
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   432.......440.........450.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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