Phyre 2 alignment of P39377 with c2ubpC

Job Description P39377
Confidence 100.00% Date Thu Jan 5 12:00:10 GMT 2012

Rank 48 Aligned Residues 339

% Identity 14% Template c2ubpC_

PDB info PDB header:hydrolase Chain: C: PDB Molecule:protein (urease alpha subunit); PDBTitle: structure of native urease from bacillus pasteurii

Resolution 2.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.											.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.
Query Sequence	A	G	F	T	L	L	Q	G	A	H	L	Y	A	P	E	D	R	G	I	C	D	V	L	V	A	N	G	K	I	I	A	V	A	S	N	I	P	S	D	.	.	.	.	.	.	.	.	.	.	I	V	P	N	C	T	V	V	D	L	S	G	Q	I	L	C	P	G	F	I	D	Q	H	V	H	L	I	G	G	G	G
Query Conservation																																								.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	V	L	D	L	L	L	T	N	A	L	I	L	D	Y	T	G	I	Y	K	A	D	I	G	V	K	D	G	Y	I	V	G	I	G	K	G	G	N	P	D	I	M	D	G	V	T	P	N	M	I	V	G	T	A	T	E	V	I	A	A	E	G	K	I	V	T	A	G	G	I	D	T	H	V	H	F	I	N	P	D	Q
Template Known Secondary structure	B		S											T	T											T	T									B		T	T	T		S	S			T	T		B			T	T							T	T																	T	T
Template Predicted Secondary structure
Template SS confidence
	66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.

	77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.								.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.
Query Sequence	E	A	G	P	T	T	R	T	P	E	V	A	L	S	R	L	T	E	A	G	V	T	S	V	V	G	L	L	G	T	D	.	.	.	.	.	.	.	S	I	S	R	H	P	E	S	L	L	A	K	T	R	A	L	N	E	E	G	I	S	A	W	M	L	T	G	A	Y	H	V	P	S	R	T	I	T	G	S	V	E
Query Conservation																																.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	V	D	V	A	L	A	N	G	I	T	T	L	F	G	G	G	T	G	P	A	E	G	S	K	A	T	T	V	T	P	G	P	W	N	I	E	K	M	L	K	S	T	E	G	L	P	I	N	V	G	I	L	G	K	G	H	G	S	S	I	A	P	I	M	E	Q	I	D
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.							T	T									S	S	S							S	S																T	T		S	S					B						S	S	S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.

	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	D	V	A	I	I	D	R	V	I	G	V	K	C	A	I	S	D	H	R	S	A	A	P	D	V	Y	H	L	A	N	M	A	A	E	S	R	V	G	G	L	L	G	G	K	P	G	V	T	V	F	H	M	G	D	S	K	K	A	L	Q	P	I	Y	D	L	L	E	N	C	D	V	P	I	S	K	L	L	P	T
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Template Sequence	A	.	.	.	.	.	.	.	.	.	.	.	G	A	A	G	L	I	H	E	D	W	G	A	T	P	A	S	I	D	R	S	L	T	V	A	D	E	A	D	V	.	.	.	.	Q	V	A	I	H	S	D	T	L	N	E	A	G	F	L	E	D	T	L	R	A	I	N	G	R	V	I	H	S	F	H	V	E	G	A
Template Known Secondary structure	T	.	.	.	.	.	.	.	.	.	.	.	T			B			B	G	G	G																		T		.	.	.	.	B				B			T	T		S	S											T	T						T	T	T	T	S	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Template SS confidence
	214												.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.					.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.

	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.													.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	H	V	N	R	N	V	P	L	F	E	Q	A	L	E	F	A	R	K	G	G	T	I	D	I	T	S	S	I	D	E	P	V	A	P	A	E	G	I	A	R	A	V	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	G	I	P	L	A	R	V	T	L	S	S	D	G	N	G	S	Q	P	F	F	D	D	E	G
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.
Template Sequence	G	G	G	H	A	P	D	.	.	.	.	I	M	A	M	A	G	H	P	N	V	L	P	S	S	T	N	P	T	R	P	F	T	V	N	T	I	D	E	H	L	D	M	L	M	V	C	H	H	L	K	Q	N	I	P	E	D	V	A	F	A	D	S	R	I	R	P	E	T	I	A	A	E	D	I	L	H	D	L	G
Template Known Secondary structure	T	S		S	T	T	T	.	.	.	.	G	G	G	G	G	G		T	T				B			S	T	T	S	S		B	T	T													T	T			T	T	S											S														T	T
Template Predicted Secondary structure								.	.	.	.
Template SS confidence
	280	.	.	.	.	.	.					.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.

	298	.	300	.	.	.	.	.	.																					.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Query Sequence	N	L	T	H	I	G	V	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	T	L	L	E	T	V	Q	V	L	V	K	D	Y	D	F	S	I	S	D	A	L	R	P	L	T	S	S	V	A	G	F	L	N	L	T	G	K	.	G	E	I	L	P	G	N	D	A	D	L
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Template Conservation
Template Sequence	I	I	S	M	M	S	T	D	A	L	A	M	G	R	A	G	E	M	V	L	R	T	W	Q	T	A	D	K	M	K	K	Q	R	G	P	L	A	E	E	K	N	G	S	D	N	F	R	L	K	R	Y	V	S	K	Y	T	I	N	P	A	I	A	Q	G	I	A	H	E	V	G	S	I	E	E	G	K	F	A	D	L
Template Known Secondary structure	S	S		B					B	T	T	S	S		T	T																			S		T	T			S	S														T								T		T	T	T	S	S	S			T	T	S	B
Template Predicted Secondary structure
Template SS confidence
	356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.

	357	.	.	360	.	.				.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure							.	.	.
Query SS confidence							.	.	.
Query Sequence	L	V	M	T	P	E	.	.	.	L	R	I	E	Q	V	Y	A	R	G	K	L	M	V
Query Conservation							.	.	.
Alig confidence							.	.	.
Template Conservation
Template Sequence	V	L	W	E	P	K	F	F	G	V	K	A	D	R	V	I	K	G	G	I	I	A	Y
Template Known Secondary structure					G	G	G	T	T	T	S		S					T	T
Template Predicted Secondary structure
Template SS confidence
	436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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