Job Description P39377 Confidence 100.00% Date Thu Jan 5 12:00:10 GMT 2012 Rank 12 Aligned Residues 343 % Identity 18% Template c2pajA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:putative cytosine/guanine deaminase; PDBTitle: crystal structure of an amidohydrolase from an environmental sample of2 sargasso sea Resolution 2.70 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.										.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.
Query Sequence		G	F	T	L	L	Q	G	A	H	L	Y	A	P	E	D	.	.	.	.	.	.	.	.	.	R	G	I	C	D	V	L	V	A	N	G	K	I	I	A	V	A	S	N	I	P	S	D	I	V	P	N	C	T	V	V	D	L	S	G	Q	I	L	C	P	G	F	I	D	Q	H	V	H	L	I	G	G	G	G	E	A
Query Conservation																	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.																						.	.	.
Template Conservation																																															.	.	.
Template Sequence		P	S	T	L	I	R	N	A	A	A	I	M	T	G	G	R	G	T	A	D	D	P	S	R	V	P	G	P	D	I	R	I	V	G	D	T	I	D	A	I	G	A	L	A	P	.	.	.	R	P	G	E	T	I	V	D	A	T	D	C	V	I	Y	P	A	W	V	N	T	H	H	H	L	F	Q	S	L	L	K	G
Template Known Secondary structure									B	S			B					S	S	S	S	S		S	B										T	T						S	S				.	.	.		T	T							B	T														G	G	G	G	G			S
Template Predicted Secondary structure																																															.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.				.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		79	80	.	.	.	.	.										.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.
Query Sequence		G	P	T	T	R	T	P	.	.	.	.	.	.	.	.	.	E	V	A	L	S	R	L	T	E	A	G	V	T	S	V	V	G	L	L	G	T	D	S	I	S	R	H	P	E	S	L	L	A	K	T	R	A	L	N	E	E	G	I	S	A	W	M	L	T	G	A	Y	H	V	P	S	R	T	I	T	G	S	V	E
Query Conservation									.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.																																																														.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		E	P	F	R	A	L	F	D	E	R	R	F	R	L	A	A	R	I	G	L	I	E	L	A	R	S	G	C	A	T	V	A	D	H	N	Y	V	Y	Y	P	G	M	P	F	D	S	S	A	I	L	F	E	E	A	E	K	L	G	L	R	F	V	L	L	R	G	G	A	T	Q	T	R	Q	L	E	A	D	.	.	.
Template Known Secondary structure					G	G	G																			T	T	T													T	T		S	S													T	T											S				S		S	T	T	.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.								.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.
Query Sequence		K	D	V	A	I	I	D	R	V	I	G	V	K	C	A	I	S	D	H	R	S	A	A	P	D	V	Y	H	L	A	N	M	A	A	E	S	R	V	G	G	L	L	G	G	K	P	G	V	T	V	F	H	M	.	.	.	.	.	.	.	G	D	S	K	K	A	L	Q	P	I	Y	D	L	L	E	N	C	D	V	P
Query Conservation																																																							.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	T	A	L	R	P	E	T	L	D	A	Y	V	A	D	I	E	R	L	A	A	R	Y	H	D	A	S	P	R	A	M	R	R	V	V	M	A	P	T	T	V	L	Y	S	I	S	P	R	E	M	R	E	T	A	A	V	A	R	R	L	G	L	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		G	G	G																			T				S	T	T		S								T	T	T	T	T	S	S															T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	K	L	L	P	T	H	V	N	R	N	V	P	L	F	E	Q	A	L	E	F	A	R	K	G	G	T	I	D	I	T	S	S	I	D	E	P	V	A	P	A	E	G	I	A	R	A	V	Q	A	G	I	P	L	A	R	V	T	L	S	S	D	G	N	G	S	Q	P	F	F	D	D	E	G	N	L	T	H	I
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.																																												.
Template Conservation											.	.	.	.	.	.	.	.																																												.
Template Sequence		M	H	S	H	L	S	G	K	S	.	.	.	.	.	.	.	.	P	V	A	F	C	G	E	H	D	W	L	G	S	D	V	W	Y	A	H	L	V	K	V	D	A	D	E	I	A	L	L	A	Q	T	G	T	G	V	A	H	C	P	Q	.	S	N	G	R	L	P	V	R	E	M	A	D	A	G	V	P	V	S	I
Template Known Secondary structure											.	.	.	.	.	.	.	.								T	T			S	T	T					S			S													T									.								T	T					T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.																																												.
Template SS confidence
		245	.	.	.	.	250	.	.	.									.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.		.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		303	.	.									.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.																																																											.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.																																																											.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	V	A	.	.	.	.	.	.	.	.	G	F	E	T	L	L	E	T	V	Q	V	L	V	K	D	Y	D	F	S	I	S	D	A	L	R	P	L	T	S	S	V	A	G	F	L	N	L	T	G	K	G	E	I	L	P	G	N	D	A	D	L	L	V	M	T	P	E	L	.	.	.	.	.	.	.	.	.	.	.
Query Conservation					.	.	.	.	.	.	.	.																																																											.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.																																																											.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	V	D	G	A	A	S	N	E	A	A	D	M	I	S	E	V	H	M	T	W	L	A	Q	R	A	R	L	A	S	I	A	E	V	I	H	W	G	T	A	G	G	A	R	V	M	G	L	D	E	V	G	K	V	A	V	G	Y	A	A	D	I	A	V	Y	R	L	D	D	P	R	Y	F	G	L	H	D	P	A	I
Template Known Secondary structure										S			S															T												T								T		T	T	S	S			S	T	T	S	B										S	G	G	G	T	T		S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
											364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	R	I	E	Q	V	Y	A	R	G	K	L	M	V	K	D	G	K	A
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	P	V	A	S	G	G	R	P	S	V	M	A	L	F	S	A	G	K	R	V	V	V	D	D	L	I
Template Known Secondary structure						S		S										T	T						T	T	B
Template Predicted Secondary structure
Template SS confidence
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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