Job Description P39377 Confidence 99.94% Date Thu Jan 5 12:00:10 GMT 2012 Rank 57 Aligned Residues 332 % Identity 15% Template c2imrA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dr_0824; PDBTitle: crystal structure of amidohydrolase dr_0824 from2 deinococcus radiodurans Resolution 1.78 Å

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		13	.	.	.	.	.	.	20	.	.						.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	G	A	H	L	Y	A	P	E	D	.	.	.	.	.	R	G	I	C	D	V	L	V	A	N	G	K	I	I	A	V	A	S	N	I	P	S	D	I	V	P	N	C	T	V	V	D	L	S	G	Q	I	L	C	P	G	F	I	D	Q	H	V	H	L	I	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation												.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	T	P	R	L	L	T	C	D	V	L	Y	T	G	A	Q	S	P	G	G	V	V	V	V	G	E	T	V	A	A	A	G	H	P	D	E	L	R	R	Q	Y	P	H	A	A	E	E	R	A	G	A	V	I	A	P	P	P	V	N	A	H	T	H	L	D	M	S	A	Y	E	F	Q	A	L	P	Y	F	Q	W	I
Template Known Secondary structure										S								S	S							T	T																T	T								S			S	S									S	S														T	S
Template Predicted Secondary structure
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
								76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	G	E	A	G	P	T	T	R	T	P	E	V	A	L	S	R	L	T	E	A	G	V	T	S	V	V	G	L	L	G	T	D	S	I	S	R	H	P	E	S	L	L	A	K	T	R	A	L	N	E	E	G	I	S	A	W	M	L	T	G	A	Y	H	V	P	S	R	T	I	T	G	S	V	E
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																													.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.
Template Sequence		P	E	V	V	I	R	G	R	H	L	R	G	V	A	A	A	Q	A	G	A	D	T	L	T	R	L	G	A	G	G	V	G	D	I	.	.	.	.	.	.	V	W	A	P	E	V	M	D	A	L	L	A	R	E	D	L	S	G	T	L	Y	F	E	V	L	N	P	F	P	D	K	A	D	E	V	F	A	A	A	R
Template Known Secondary structure									T	T																	T	T								.	.	.	.	.	.			S									T		T	T											B			G	G	G
Template Predicted Secondary structure																																				.	.	.	.	.	.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150							.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		150	.	.	.	.	.	.	.	.	.	160			.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		K	D	V	A	I	I	D	R	V	I	G	.	.	V	K	C	A	I	S	D	H	R	S	A	A	P	D	V	Y	H	L	A	N	M	A	A	E	S	R	V	G	G	L	L	G	G	K	P	G	V	T	V	F	H	M	G	D	S	K	K	A	L	Q	P	I	Y	D	L	L	E	N	C	D	V	P	I	S	K	L	L
Query Conservation													.	.
Alig confidence													.	.																														.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.
Template Sequence		T	H	L	E	R	W	R	R	L	E	R	P	G	L	R	L	G	L	S	P	H	T	P	F	T	V	S	H	R	L	M	R	L	L	S	D	Y	A	A	G	E	G	.	.	.	.	.	.	L	P	L	Q	I	H	V	A	E	H	P	T	E	L	E	M	F	R	T	G	G	G	P	L	W	D	N	R	M	P	A	L
Template Known Secondary structure									T	T		B	T	T										S	S	S	B																T	.	.	.	.	.	.			B					S		S										S		S	T	T	G	G	G	S		G	G	G
Template Predicted Secondary structure																																												.	.	.	.	.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.							.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		228	.	230							.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.					.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.																																																						.	.	.	.
Query SS confidence					.	.	.	.	.	.																																																						.	.	.	.
Query Sequence		P	T	H	.	.	.	.	.	.	V	N	R	N	V	P	L	F	E	Q	A	L	E	F	A	R	K	G	G	T	I	D	I	T	S	S	I	D	E	P	V	A	P	A	E	G	I	A	R	A	V	Q	A	G	I	P	L	A	R	V	T	L	S	.	.	.	.	S	D	G	N	G	S	Q	P	F	F	D	D	E	G
Query Conservation					.	.	.	.	.	.																																																						.	.	.	.
Alig confidence					.	.	.	.	.	.																																																						.	.	.	.
Template Conservation
Template Sequence		Y	P	H	T	L	A	E	V	I	G	R	E	P	G	P	D	L	T	P	V	R	Y	L	D	E	L	G	V	L	A	A	R	P	T	L	V	H	M	V	N	V	T	P	D	D	I	A	R	V	A	R	A	G	C	A	V	V	T	C	P	R	S	N	H	H	L	E	C	G	T	F	D	W	P	A	F	A	A	A	G
Template Known Secondary structure		S		S	S						T	S				T	T											T		G	G	G									S													T													T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310						.	.	.	.	.	.	.	.	.		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.				.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.										.																											.	.	.
Query SS confidence															.	.	.	.	.										.																											.	.	.
Query Sequence		N	L	T	H	I	G	V	A	G	F	E	T	L	.	.	.	.	.	L	E	T	V	Q	V	L	V	K	.	D	Y	D	F	S	I	S	D	A	L	R	P	L	T	S	S	V	A	G	F	L	N	L	T	G	K	.	.	.	G	E	I	L	P	G	N	D	A	D	L
Query Conservation															.	.	.	.	.										.																											.	.	.
Alig confidence															.	.	.	.	.										.																											.	.	.
Template Conservation
Template Sequence		V	E	V	A	L	G	T	D	S	V	A	S	G	E	T	L	N	V	R	E	E	V	T	F	A	R	Q	L	Y	P	G	L	D	P	R	V	L	V	R	A	A	V	K	G	G	Q	R	V	V	G	T	P	F	L	R	R	G	E	T	W	Q	E	G	F	R	W	E	L
Template Known Secondary structure															S		S		T												T	T	S																							S	T	T	S	B			G	G	G	B	G	G	G
Template Predicted Secondary structure
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions