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Job DescriptionP39377
Confidence100.00%DateThu Jan 5 12:00:10 GMT 2012
Rank1Aligned Residues374
% Identity100%Templatec2aqoB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:isoaspartyl dipeptidase; PDBTitle: crystal structure of e. coli isoaspartyl dipeptidase mutant e77q
Resolution1.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MIDYTAAGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPGFIDQHVHLIGGGGEAGP
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Template Sequence  MIDYTAAGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPGFIDQHVHLIGGGGQAGP
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GGG

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TTSSSS

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   1........10.........20.........30.........40.........50.........60.........70.........80
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  TTRTPEVALSRLTEAGVTSVVGLLGTDSISRHPESLLAKTRALNEEGISAWMLTGAYHVPSRTITGSVEKDVAIIDRVIG
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Template Conservation                 
 
 
                          
                                 
Template Sequence  TTRTPEVALSRLTEAGVTSVVGLLGTDSISRHPESLLAKTRALNEEGISAWMLTGAYHVPSRTITGSVEKDVAIIDRVIG
Template Known Secondary structure  GGB




TT


S

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TT
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   81........90.........100.........110.........120.........130.........140.........150.........160
 
   161........170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  VKCAISDHRSAAPDVYHLANMAAESRVGGLLGGKPGVTVFHMGDSKKALQPIYDLLENCDVPISKLLPTHVNRNVPLFEQ
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Template Sequence  V. CAISDHRSAAPDVYHLANMAAESRVGGLLGGKPGVTVFHMGDSKKALQPIYDLLENCDVPISKLLPTHVNRNVPLFEQ
Template Known Secondary structure 
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SSTTS



TS

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   161 ........170.........180.........190.........200.........210.........220.........230.........
 
   241........250.........260.........270.........280.........290.........300.........310.........320
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Query Sequence  ALEFARKGGTIDITSSIDEPVAPAEGIARAVQAGIPLARVTLSSDGNGSQPFFDDEGNLTHIGVAGFETLLETVQVLVKD
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Template Sequence  ALEFARKGGTIDITSSIDEPVAPAEGIARAVQAGIPLARVTLSSDGNGS. . . . . . . . . . . . . . VAGFETLLETVQVLVKD
Template Known Secondary structure  TT

TT

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TT

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BT

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   241........250.........260.........270.........280......... 290.........300......
 
   321........330.........340.........350.........360.........370.........380.........
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Query Sequence  YDFSISDALRPLTSSVAGFLNLTGKGEILPGNDADLLVMTPELRIEQVYARGKLMVKDGKACVKGTFET
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Template Sequence  YDFSISDALRPLTSSVAGFLNLTGKGEILPGNDADLLVMTPELRIEQVYARGKLMVKDGKACVKGTFET
Template Known Secondary structure 


GGGTTT
TT
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TTSB


TT

TTTTSS

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   321........330.........340.........350.........360.........370.........380.........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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