Job Description P39377 Confidence 100.00% Date Thu Jan 5 12:00:10 GMT 2012 Rank 38 Aligned Residues 352 % Identity 15% Template c1r9yA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:cytosine deaminase; PDBTitle: bacterial cytosine deaminase d314a mutant. Resolution 1.57 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		G	F	T	L	L	Q	G	A	H	L	Y	A	P	E	D	R	G	I	C	D	V	L	V	A	N	G	K	I	I	A	V	A	S	N	I	P	S	D	I	V	P	N	C	T	V	V	D	L	S	G	Q	I	L	C	P	G	F	I	D	Q	H	V	H	L	I	G	G	G	G	E	A	G	P	T	T	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence																			.	.																				.																																					.	.	.	.	.
Template Conservation																			.	.																				.
Template Sequence		A	L	Q	T	I	I	N	A	R	L	P	G	E	E	G	L	W	.	.	Q	I	H	L	Q	D	G	K	I	S	A	I	D	A	Q	S	G	V	M	.	P	I	T	E	N	S	L	D	A	E	Q	G	L	V	I	P	P	F	V	E	P	H	I	H	L	D	T	T	Q	T	A	G	Q	P	N	W	N	Q	S	G	T
Template Known Secondary structure										B		T	T			S			.	.						T	T									S	S			.				T	T					T	T					S									T	T	T	T	T		T	T	S	S	S			S	S
Template Predicted Secondary structure																			.	.																				.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20			.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
																							83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	T	P	E	V	A	L	S	R	L	T	E	A	G	V	T	S	V	V	G	L	L	G	T	D	S	I	S	R	H	P	E	S	L	L	A	K	T	R	A	L	N	E	E	G	I	S	A	W	M	L	T	G	A	Y	H	V	P	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	F	E	G	I	E	R	W	A	E	R	K	A	L	L	T	H	D	D	V	K	Q	R	A	W	Q	T	L	K	W	Q	I	A	N	G	I	Q	H	V	R	T	H	V	D	V	S	D	A	T	L	T	A	L	K	A	M	L	E	V	K	Q	E	V	A	P	W	I	D	L	Q	I	V	A	F	P	Q	E	G	I	L
Template Known Secondary structure											T	T	G	G	G																				T	T												S	T	T															T	T	T										T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.									.	.	.	.	210	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.
Query Sequence		R	T	I	T	G	S	V	E	K	D	V	A	I	I	D	R	V	I	G	V	K	C	A	I	S	D	H	R	S	A	A	P	D	V	Y	H	L	A	N	M	A	A	E	S	R	V	G	G	L	L	G	G	K	P	G	V	T	V	F	H	M	G	D	S	.	.	.	.	.	.	.	.	K	K	A	L	Q	P	I	Y
Query Conservation																																																																		.	.	.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.											.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.
Template Sequence		S	Y	P	N	G	E	A	L	L	E	E	A	L	R	L	G	A	D	V	V	G	A	I	P	H	F	E	F	T	R	E	Y	G	V	E	S	L	H	K	T	F	A	L	A	Q	K	Y	D	.	.	.	.	.	.	R	L	I	D	V	H	C	D	E	I	D	D	E	Q	S	R	F	V	E	T	V	A	A	L	A	H
Template Known Secondary structure		S	S	T	T											T	T		S						G	G	G	S	S	S																			T	.	.	.	.	.	.										S	S		T	T
Template Predicted Secondary structure																																																		.	.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.							.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.											.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	L	E	N	C	D	V	P	I	S	K	L	L	P	T	H	V	N	R	N	V	P	L	F	E	Q	A	L	E	F	A	R	K	G	G	T	I	D	I	T	S	S	I	D	E	P	V	A	P	.	.	.	.	.	.	.	.	.	.	A	E	G	I	A	R	A	V	Q	A	G	I	P	L	A	R	V	T	L	S
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	E	G	M	G	A	R	V	T	A	S	H	T	T	A	M	H	S	Y	N	G	A	Y	T	S	R	L	F	R	L	L	K	M	S	G	I	N	F	V	A	N	P	L	V	N	I	H	L	Q	G	R	F	D	T	Y	P	K	R	R	G	I	T	R	V	K	E	M	L	E	S	G	I	N	V	C	F	G	H	D	A
Template Known Secondary structure				T		G	G	G							G	G	G	G	G	S																T														T	T	T	T			S	S															T								B
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		S	D	G	N	G	S	Q	P	F	F	D	D	E	G	N	L	T	H	I	G	V	A	G	F	E	T	L	L	E	T	V	Q	V	L	V	K	D	Y	D	F	S	I	S	D	A	L	R	P	L	T	S	S	V	A	G	F	L	N	L	T	G	K	G	E	I	L	P	G	N	D	A	D	L	L	V	M	T	P	E	.
Query Conservation																																																																																	.
Alig confidence										.	.	.	.	.	.	.	.	.	.																																												.																		.
Template Conservation										.	.	.	.	.	.	.	.	.	.																																												.
Template Sequence		V	F	D	P	W	Y	P	L	.	.	.	.	.	.	.	.	.	.	G	T	A	N	M	L	Q	V	L	H	M	G	L	H	V	C	Q	L	M	G	Y	G	Q	I	N	D	G	L	N	L	I	T	H	H	S	A	R	T	L	N	L	Q	D	.	Y	G	I	A	A	G	N	S	A	N	L	I	I	L	P	A	E	N
Template Known Secondary structure		S	S	B	T	T	B			.	.	.	.	.	.	.	.	.	.			S													T	T			S						G	G	G	G	G	G	T							T	T		S	S	.		S	S		T	T	S	B							S	S	S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.																																												.
Template SS confidence
		315	.	.	.	.	320	.	.											.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.		.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
										363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	L	R	I	E	Q	V	Y	A	R	G	K	L	M	V	K	D	G
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	F	D	A	L	R	R	Q	V	P	V	R	Y	S	V	R	G	G	K	V	I	A	S	T	Q
Template Known Secondary structure									T				S					T	T
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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