Return to main results Retrieve Phyre Job Id

Job DescriptionP39377
Confidence100.00%DateThu Jan 5 12:00:10 GMT 2012
Rank5Aligned Residues369
% Identity16%Templatec1k1dF_
PDB info PDB header:hydrolaseChain: F: PDB Molecule:d-hydantoinase; PDBTitle: crystal structure of d-hydantoinase
Resolution3.01 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910.........20.........30.........40.........50.........60.........70.........80........
Predicted Secondary structure 














































Query SS confidence 















































































Query Sequence  FTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPGFIDQHVHLIGGGGEAGPTTRTPEVA
Query Conservation   




  
         

 
 



  

            


  
  
 




 
 

                 
Alig confidence 


































...


































.





Template Conservation    

 

 
          
 
 

 
  

    ...     


  
  
 




 
 

          .      
Template Sequence  TKIIKNGTIVTATDTYEAHLLIKDGKIAMIGQNLE. . . EKGAEVIDAKGCYVFPGGIDPHTHLDMPLGGTVTK. DDFESG
Template Known Secondary structure 

SS

SSBSS

...
SS



TT


SS


SSS

S.S
Template Predicted Secondary structure 













...
























.
Template SS confidence 















































































   2.......10.........20.........30...... ...40.........50.........60.........70. ......
 
   8990.........100.........110.........120.........130.........140.........150.........160........
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  LSRLTEAGVTSVVGLLGTDSISRHPESLLAKTRALNEEGISAWMLTGAYHVPSRTITGSVEKDVAIIDRVIGVKCAISDH
Query Conservation      
  




                          
                                         
Alig confidence 
































































..












Template Conservation         


                                                       ..             
Template Sequence  TIAAAFGGTTTIIDFCLTNKGEPLKKAIETWHNKANGKAVIDYGFHLMISEITDDVLEELPKVLE. . EEGITSLVFMAYK
Template Known Secondary structure  TT


TTS
TTT
SS

S


..SS


B

BSSST
Template Predicted Secondary structure 























..





Template SS confidence 















































































   78.80.........90.........100.........110.........120.........130.........140.. .......150.....
 
   169170.........180..... ....190.........
Predicted Secondary structure 





.................................................




Query SS confidence 
















. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .













Query Sequence  RSAAPDVYHLANMAAES. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RVGGLLGGKPGVTV
Query Conservation                   .................................................              
Alig confidence 
















.................................................













Template Conservation                                                                         
        
Template Sequence  NVFQADDGTLYCTLLAAKELGALVMVHAENGDVIDYLTKKALADGNTDPIYHALTRPPELEGEATGRACQLTELAGSQLY
Template Known Secondary structure  TTTB

T
BB


TT

STTS
T
Template Predicted Secondary structure 





























Template SS confidence 















































































   157..160.........170.........180.........190.........200.........210.........220.........230......
 
   200.........210.........220.........230.........240.........250.........260.........270.........
Predicted Secondary structure 





























Query SS confidence 















































































Query Sequence  FHMGDSKKALQPIYDLLENCDVPISKLLPTHVNRNVPLFEQALEFARKGGTIDITSSIDEPVAPAEGIARAVQAGIPLAR
Query Conservation                                                                                  
Alig confidence 















































....



























Template Conservation              
      
         
                  ....    
                 
     
Template Sequence  VVHVTCAQAVEKIAEARNKGLDVWGETCPQYLVLDQSYLEKPNFEGAK. . . . YVWSPPLREKWHQEVLWNALKNGQLQTL
Template Known Secondary structure 
S

STT



GGGGTSSTTGGGG....G

SS



TTTSS
Template Predicted Secondary structure 






















....








Template SS confidence 















































































   237..240.........250.........260.........270.........280.... .....290.........300.........310..
 
   280.........290.........300..... ....310.........320.........330.........340..... ....350.....
Predicted Secondary structure 


















...










.







Query SS confidence 

























. . .







































.









Query Sequence  VTLSSDGNGSQPFFDDEGNLTHIGVA. . . GFETLLETVQVLVKDYDFSISDALRPLTSSVAGFLNLTGK. GEILPGNDAD
Query Conservation                         
  ...                


  


   
   
  

    .
 
  

 

Alig confidence 

























...







































.









Template Conservation    
                                           

  


   
   
  

     
 
  

 

Template Sequence  GSDQCSFDFKGQKELGRGDFTKIPNGGPIIEDRVSILFSEGVKKGRITLNQFVDIVSTRIAKLFGLFPKKGTIVVGSDAD
Template Known Secondary structure 


B



TTTTGGGGSS
GGGS


B

TTTTGGGTSS
TTT
TTTSS

STTSB

Template Predicted Secondary structure 








































Template SS confidence 















































































   313......320.........330.........340.........350.........360.........370.........380.........390..
 
   356...360... ......370.........380.. .....
Predicted Secondary structure 



.........................




...


Query SS confidence 







. . . . . . . . . . . . . . . . . . . . . . . . .


















. . .




Query Sequence  LLVMTPEL. . . . . . . . . . . . . . . . . . . . . . . . . RIEQVYARGKLMVKDGKAC. . . VKGTF
Query Conservation 




 
 ......................... 
  
   
  
   

  ...     
Alig confidence 







.........................


















...




Template Conservation 


 
 
                           
  
 
 
  
   
        
  
Template Sequence  LVIFDPNIERVISAETHHMAVDYNAFEGMKVTGEPVSVLCRGEFVVRDKQFVGKPGYGQY
Template Known Secondary structure 

TTT

SSSS

TTTT
TTTT


TT
S
B
Template Predicted Secondary structure 

























Template SS confidence 



























































   393......400.........410.........420.........430.........440.........450..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions