Job Description P39377 Confidence 100.00% Date Thu Jan 5 12:00:10 GMT 2012 Rank 49 Aligned Residues 344 % Identity 14% Template c1fwcC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:urease; PDBTitle: klebsiella aerogenes urease, c319a variant at ph 8.5 Resolution 2.00 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40									.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.
Query Sequence		A	A	G	F	T	L	L	Q	G	A	H	L	Y	A	P	E	D	R	G	I	C	D	V	L	V	A	N	G	K	I	I	A	V	A	S	.	.	.	.	.	.	.	.	N	I	P	S	D	I	V	P	N	C	T	V	V	D	L	S	G	Q	I	L	C	P	G	F	I	D	Q	H	V	H	L	I	G	G	G	G	E
Query Conservation																																					.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.																																				.	.
Template Conservation																																																																																.	.
Template Sequence		D	C	V	D	L	V	L	T	N	A	L	I	V	D	H	W	G	I	V	K	A	D	I	G	V	K	D	G	R	I	F	A	I	G	K	A	G	N	P	D	I	Q	P	N	V	T	I	P	I	G	A	A	T	E	V	I	A	A	E	G	K	I	V	T	A	G	G	I	D	T	H	I	H	W	I	C	P	Q	.	.
Template Known Secondary structure		G	S		S											T	T											T	T											T	T	T		S	S							T	T							T	T															S		T		.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.								.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.
Query Sequence		A	G	P	T	T	R	T	P	E	V	A	L	S	R	L	T	E	A	G	V	T	S	V	V	G	L	L	G	T	D	.	.	.	.	.	.	.	S	I	S	R	H	P	E	S	L	L	A	K	T	R	A	L	N	E	E	G	I	S	A	W	M	L	T	G	A	Y	H	V	P	S	R	T	I	T	G	S	V	E	K
Query Conservation																																.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	Q	A	E	E	A	L	V	S	G	V	T	T	M	V	G	G	G	T	G	P	A	A	G	T	H	A	T	T	C	T	P	G	P	W	Y	I	S	R	M	L	Q	A	A	D	S	L	P	V	N	I	G	L	L	G	K	G	N	V	S	Q	P	D	A	L	R	E	Q	V	A	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.									T										S	S																								T	T	S	S	S					B						S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	A	I	I	D	R	V	I	G	V	K	C	A	I	S	D	H	R	S	A	A	P	D	V	Y	H	L	A	N	M	A	A	E	S	R	V	G	G	L	L	G	G	K	P	G	V	T	V	F	H	M	G	D	S	K	K	A	L	Q	P	I	Y	D	L	L	E	N	C	D	V	P	I	S	K	L	L	P	T	H
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Template Sequence		G	.	.	.	.	.	.	.	.	.	.	.	V	I	G	L	I	H	E	D	W	G	A	T	P	A	A	I	D	C	A	L	T	V	A	D	E	M	D	I	.	.	.	.	Q	V	A	L	H	S	D	T	L	N	E	S	G	F	V	E	D	T	L	A	A	I	G	G	R	T	I	H	T	F	H	T	E	G	A	G
Template Known Secondary structure		T	.	.	.	.	.	.	.	.	.	.	.		S	B			B	G	G	G																		T		.	.	.	.	B				B			T	T		S	S											T	T						T	T	T	T	S	T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Template SS confidence
		212												.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240					.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.									.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.
Query Sequence		V	N	R	N	V	P	L	F	E	Q	A	L	E	F	A	R	K	G	G	T	I	D	I	T	S	S	I	D	E	P	V	A	P	A	E	G	I	A	R	A	V	Q	A	G	I	P	L	A	R	V	T	L	S	S	D	G	N	G	S	Q	P	F	.	.	.	.	.	.	.	.	F	D	D	E	G	N	L	T	H	I
Query Conservation																																																																.	.	.	.	.	.	.	.
Alig confidence																																																																.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	G	H	A	P	D	I	I	T	A	C	A	H	P	N	I	L	P	S	S	T	N	P	T	L	P	Y	T	L	N	T	I	D	E	H	L	D	M	L	M	V	A	H	H	L	D	P	D	I	A	E	D	V	A	F	A	E	S	R	I	R	R	E	T	I	A	A	E	D	V	L	H	D	L	G	A	F	S	L	T
Template Known Secondary structure		S	S	S	T	T	T	G	G	G	G	G	G	S	T	T							S	T	T	S	S		B	T	T														T			T	T	S									T	T															T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		303	.	.	.	.	.										.	310	.	.	.	.	.	.	.	.	.	320	.	.												.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.																								.
Query SS confidence								.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.																								.
Query Sequence		G	V	A	G	F	E	.	.	.	.	.	.	.	.	.	T	L	L	E	T	V	Q	V	L	V	K	D	Y	D	.	.	.	.	.	.	.	.	.	.	.	F	S	I	S	D	A	L	R	P	L	T	S	S	V	A	G	F	L	N	L	T	G	K	.	G	E	I	L	P	G	N	D	A	D	L	L	V	M	T	P
Query Conservation								.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.																								.
Alig confidence								.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation
Template Sequence		S	S	D	S	Q	A	M	G	R	V	G	E	V	I	L	R	T	W	Q	V	A	H	R	M	K	V	Q	R	G	A	L	A	E	E	T	G	D	N	D	N	F	R	V	K	R	Y	I	A	K	Y	T	I	N	P	A	L	T	H	G	I	A	H	E	V	G	S	I	E	V	G	K	L	A	D	L	V	V	W	S	P
Template Known Secondary structure					T	T	S	S	S		T	T																			S		T	T			S	S	S											T	T	T							T	T		T	T	T	S	S	S	S		T	T	S	B								G
Template Predicted Secondary structure
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
		362				.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure			.	.	.
Query SS confidence			.	.	.
Query Sequence		E	.	.	.	L	R	I	E	Q	V	Y	A	R	G	K	L	M	V
Query Conservation			.	.	.
Alig confidence			.	.	.
Template Conservation
Template Sequence		A	F	F	G	V	K	P	A	T	V	I	K	G	G	M	I	A	I
Template Known Secondary structure		G	G	T	T	T	S		S					T	T
Template Predicted Secondary structure
Template SS confidence
		438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions