Job Description P10423 Confidence 99.79% Date Thu Jan 5 11:32:15 GMT 2012 Rank 25 Aligned Residues 249 % Identity 18% Template c3t6mA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of the catalytic domain of dape protein from2 v.cholerea in the zn bound form Resolution 1.65 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	R	H	I	A	T	F	F	P	G	R	M	T	G	T	P	A	E	M	L	S	A	D	Y	I	R	Q	Q	F	Q	Q	M	G	Y	R	S	D	I	R	T	F	N	S	R	Y	I	Y	T	A	R	D	N	R	K	S	W	H	N	V	T	G	S	T	V	I	A	A	H	E	G	K	A	P	Q	Q	I	I	I	M
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Sequence		P	V	L	A	L	A	K	E	L	I	S	R	Q	S	V	T	P	A	D	A	G	C	Q	D	L	M	I	E	R	L	K	A	L	G	F	E	I	E	S	M	V	F	E	D	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	F	W	A	R	R	G	T	Q	S	P	.	L	F	V	F	A
Template Known Secondary structure												T	S			B	T	T			T	T											T	T	T									T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S	S	S		.
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50																		.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.								.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.			.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.																															.	.
Query SS confidence															.	.	.	.	.	.	.																															.	.
Query Sequence		A	H	L	D	T	Y	A	P	L	S	D	A	D	.	.	.	.	.	.	.	A	D	A	N	L	G	G	L	T	L	Q	G	M	D	D	N	A	A	G	L	G	V	M	L	E	L	A	E	R	L	.	.	K	N	T	P	T	E	Y	G	I	R	F	V	A	T	S	G	E	E	E	G	K	L	G	A	E	N	L	L
Query Conservation															.	.	.	.	.	.	.																															.	.
Alig confidence															.	.	.	.	.	.	.																															.	.																			.
Template Conservation																																																																								.
Template Sequence		G	H	T	D	V	V	P	A	G	P	L	S	Q	W	H	T	P	P	F	E	P	T	V	I	D	G	F	L	H	G	R	G	A	A	D	M	K	G	S	L	A	C	M	I	V	A	V	E	R	F	I	A	E	H	P	D	H	Q	G	S	I	G	F	L	I	T	S	D	E	E	.	G	I	N	G	T	V	R	V	V
Template Known Secondary structure						B						G	G	G		S	S		T	T	S					T	T				S	T	T	T	T	T	T																			T	T		S	S								S		T	T	.
Template Predicted Secondary structure																																																																								.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	M	S	D	T	E	K	K	N	T	L	L	V	I	N	L	D	N	L	I	V	G	D	K	L	Y	F	N	S	G	V	K	T	P	E	A	V	R	K	L	T	R	D	R	A	L	A	I	A	R	S	H	G	I	A	A	T	T	N	P	G	L	N	K	N	Y	P	K	G	T	G	C	C	N	D	A	E	I	F
Query Conservation
Alig confidence									.																																																									.	.	.	.	.
Template Conservation									.																																																									.	.	.	.	.
Template Sequence		E	T	L	M	A	R	N	.	E	L	I	D	M	C	I	V	G	E	P	S	S	T	L	A	V	G	D	V	V	K	N	G	R	R	G	G	G	F	L	T	D	T	G	E	L	L	A	A	V	V	A	A	V	E	E	V	N	H	Q	A	P	A	L	L	.	.	.	.	.	T	T	G	G	T	S	D	G	R	F	I
Template Known Secondary structure							T	T	.										S			B	S	S	S	T	T	S							G	G	G	G	T	S																			S	S						.	.	.	.	.	S	S		S
Template Predicted Secondary structure									.																																																									.	.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210						.	.	.	.	.	.	.	.	.	220	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	A	G	I	A	V	L	S	V	E	A	T	N	W	N	L	G	N	K	D	G	Y	Q	Q	R	A	K	T	P	A	F	P	A	G	N	S	W	H	D	V	R	L	D	N	H	Q	H	I	D	K	A	L	P	G	R	I	E	R	R	C	R	D	V	M	R	I	M	L	P	L	V	K	E	L
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	Q	M	G	A	Q	V	V	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	P	V	N	A	T	I	H	K	V	N	E	C	V	R	I	.	.	.	.	.	.	.	.	.	.	A	D	L	E	K	L	T	D	M	Y	Q	K	T	L	N	H	L
Template Known Secondary structure					T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	B		T	T	T	T	S	T	T						.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		222	.	.	.	.	.	.	.	230	.																							.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.											.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions