Return to main results Retrieve Phyre Job Id

Job DescriptionP30014
Confidence99.95%DateThu Jan 5 11:45:43 GMT 2012
Rank16Aligned Residues169
% Identity13%Templated2igia1
SCOP infoRibonuclease H-like motif Ribonuclease H-like DnaQ-like 3'-5' exonuclease
Resolution1.70

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1920.........30.........40.........50.........60..... ....70.........80.........90...
Predicted Secondary structure 

















.....












Query SS confidence 














































. . . . .



























Query Sequence  PVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPF. . . . . VGANLQPEALAFNGIDPNDPDRGAVSEY
Query Conservation   



 




      






       
 
         
 
 .....    
      
 

    
        
Alig confidence 






























...












.....





















.




Template Conservation   
 

 




      






       ...         
 
                  



   
  .     
Template Sequence  LIWIDLEMTGLDPERDRIIEIATLVTDANLN. . . ILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKAS. TMGDR
Template Known Secondary structure  SSS
TTT


TT

...



TT

TT
.


Template Predicted Secondary structure 












...



















.


Template SS confidence 















































































   7..10.........20.........30....... ..40.........50.........60.........70....... ..80..
 
   94.....100.........110.........120.........130.........140.........150.........160.........170...
Predicted Secondary structure 


























Query SS confidence 















































































Query Sequence  EALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALGQTVLSKACQTAGM
Query Conservation           
             

 

  

   
                                  
  
    

Alig confidence 















...
























.





















.......





Template Conservation           
      ...    
 
    

   
        .        
             .......      
Template Sequence  EAELATLEFLKQWVPA. . . GKSPICGNSIGQDRRFLFKYMPELE. AYFHYRYLDVSTLKELARRWKP. . . . . . . EILDGF
Template Known Secondary structure  TTTS
T...TTS
SS
.S
S
T
G.......GGGGGS
Template Predicted Secondary structure 


...






.








.......

Template SS confidence 















































































   83......90........ .100.........110.........120... ......130.........140..... ....150.
 
   174.....180.........190.........200....
Predicted Secondary structure 









Query SS confidence 






























Query Sequence  DFDSTQAHSALYDTERTAVLFCEIVNRWKRL
Query Conservation        

 

 

  

 
   
       
Alig confidence 



..
























Template Conservation      ..




 

  
    
         
Template Sequence  TKQG. . THQAMDDIRESVAELAYYREHFIKL
Template Known Secondary structure 



..


T


Template Predicted Secondary structure 



..





Template SS confidence 






























   152... ....160.........170.........180
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions