Job Description P30014 Confidence 56.75% Date Thu Jan 5 11:45:43 GMT 2012 Rank 56 Aligned Residues 158 % Identity 16% Template c3mx2A_ PDB info PDB header:nuclear protein Chain: A: PDB Molecule:nucleoprotein; PDBTitle: lassa fever virus nucleoprotein complexed with dttp Resolution 1.98 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	Q	L	T	G	L	C	D	R	F	R	G	F	Y	P	V	V	I	D	V	E	T	A	G	F	N	A	K	T	D	A	L	L	E	I	A	A	I	T	L	K	M	D	E	Q	G	W	L	M	P	D	T	T	L	H	F	H	V	E	P	F	V	G	A	N	L	Q	P	E	A	L	A	F	N	G	I	D	P	N
Query Conservation
Alig confidence																															.	.	.	.	.											.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.											.	.	.	.	.	.	.	.
Template Sequence		L	M	T	L	K	D	A	M	L	Q	L	D	P	N	A	K	T	W	M	D	I	E	G	R	P	E	D	P	V	.	.	.	.	.	E	I	A	L	Y	Q	P	S	S	G	.	.	.	.	.	.	.	.	C	Y	I	H	F	F	R	E	P	T	D	L	K	Q	F	K	Q	D	A	K	Y	S	H	G	I	D	V	T
Template Known Secondary structure									G	G	G	S		T	T	S								S		T	T	S		S	.	.	.	.	.							T	T	T	T	.	.	.	.	.	.	.	.										S												T	T		B		G	G
Template Predicted Secondary structure																															.	.	.	.	.											.	.	.	.	.	.	.	.
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.						.	400	.	.	.	.	.	.	.	.									.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	D	R	G	A	V	S	E	Y	E	A	L	H	E	I	F	K	V	V	R	K	G	I	K	A	S	G	C	N	R	A	I	M	V	A	H	N	A	N	F	D	H	S	F	M	M	A	A	A	E	R	A	S	L	K	R	N	P	F	H	P	F	A	T	F	D	T	A	A	L	A	G	L	A	L	G	Q	T	V
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.
Template Sequence		D	L	F	A	T	.	.	.	.	.	.	.	.	.	.	.	Q	P	G	L	T	S	A	V	I	D	A	L	P	R	N	M	V	I	T	C	Q	G	S	D	D	I	R	K	L	L	E	S	.	.	.	.	Q	G	R	K	D	I	K	L	I	D	I	A	L	S	K	T	D	S	R	K	Y	E	N	A	V	W	D	Q
Template Known Secondary structure		G	G	T	T	B	.	.	.	.	.	.	.	.	.	.	.		T	T									S		T	T						S		S										.	.	.	.	T	T			S														T	T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.
Template SS confidence
		437	.	.	440	.												.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.					.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.
		164	.	.	.	.	.	170	.		.	.	.	.	.	.	.				.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.								.	.	.
Query SS confidence										.								.	.	.
Query Sequence		L	S	K	A	C	Q	T	A	.	G	M	D	F	D	S	T	.	.	.	Q	A	H	S	A	L	Y	D	T	E	R
Query Conservation										.								.	.	.
Alig confidence										.								.	.	.
Template Conservation
Template Sequence		Y	K	D	L	C	H	M	H	T	G	V	V	V	E	K	K	E	E	I	T	P	H	C	A	L	M	D	C	I	M
Template Known Secondary structure			G	G	G				B		S
Template Predicted Secondary structure
Template SS confidence
		502	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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