Job Description P30014 Confidence 81.49% Date Thu Jan 5 11:45:43 GMT 2012 Rank 54 Aligned Residues 101 % Identity 17% Template c3ikmD_ PDB info PDB header:transferase Chain: D: PDB Molecule:dna polymerase subunit gamma-1; PDBTitle: crystal structure of human mitochondrial dna polymerase2 holoenzyme Resolution 3.24 Å

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		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.																					.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	S	G	C	N	R	A	I	M	V	A	H	N	A	N	F	D	H	S	F	M	M	A	A	A	E	R	A	S	L	K	R	N	P	F	H	P	F	A	T	F	D	T	A	A	L	A	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	G	Q	T	V	L	S	K	A	C
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.
Template Sequence		Q	R	D	W	Q	E	Q	L	V	V	G	H	N	V	S	F	D	R	A	H	I	R	E	Q	Y	.	.	.	L	I	Q	G	S	R	M	R	F	L	D	T	M	S	M	H	M	A	I	S	G	L	S	S	F	Q	R	S	L	W	I	A	A	K	Q	G	W	D	W	L	D	I	S	S	V	N	S	L	A	E	V	H
Template Known Secondary structure		T	T			S	S								S	T	T	S								T	.	.	.	T	T	T																																T										S	T	T	T	S
Template Predicted Secondary structure																											.	.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.				.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.																						.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	T	A	G	M	D	F	D	S	T	Q	A	H	S	A	L	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	T	E	R	T	A	V	L	F	C	E	I	V	N	R	W	K	R	L	G	G	W	P	L	S	A	A
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	L	Y	V	G	G	P	P	L	E	K	E	P	R	E	L	F	V	K	G	T	M	K	D	I	R	E	N	F	Q	D	L	M	Q	Y	C	A	Q	D	V	W	A	T	H	E	V	F	Q	Q	Q	L	P	L	F	L	E	R	C	P	H	P	V	T	L	A
Template Known Secondary structure				T		S	S	T	T	T	S	S	S	S	S	S	G	G	G	S	S		S								T	T																									S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions