Job Description P30014 Confidence 98.01% Date Thu Jan 5 11:45:43 GMT 2012 Rank 36 Aligned Residues 171 % Identity 19% Template c3iayA_ PDB info PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase delta catalytic subunit; PDBTitle: ternary complex of dna polymerase delta Resolution 2.00 Å

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		20	.	.	.	.	.	.	.	.	.						30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure												.	.	.	.	.
Query SS confidence												.	.	.	.	.
Query Sequence		V	V	I	D	V	E	T	A	G	F	.	.	.	.	.	N	A	K	T	D	A	L	L	E	I	A	A	I	T	L	K	M	D	E	Q	G	W	L	M	P	D	T	T	L	H	F	H	V	E	P	F	V	G	A	N	L	Q	P	E	A	L	A	F	N	G	I	D	P	N	D	P	D	R	G	A	V	S	E	Y	E
Query Conservation												.	.	.	.	.
Alig confidence												.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	S	F	D	I	E	C	A	G	R	I	G	V	F	P	E	P	E	Y	D	P	V	I	Q	I	A	N	V	V	S	I	A	G	A	K	K	P	F	I	R	N	V	F	T	L	N	T	C	S	P	I	T	G	S	M	I	F	S	H	A	T	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E
Template Known Secondary structure												T	T	S				T	T	T													T	T		S	S		S								S					B	T	T	B						S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.																	380	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																														.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	H	E	I	F	K	V	V	R	K	G	I	K	A	S	G	C	N	R	A	I	M	V	A	H	N	A	.	N	F	D	H	S	F	M	M	A	A	A	E	R	A	S	L	K	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																														.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.											.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.
Template Sequence		M	L	S	N	W	R	N	F	I	I	K	V	.	.	.	.	.	.	D	P	D	V	I	I	G	Y	N	T	T	N	F	D	I	P	Y	L	L	N	R	A	K	A	L	K	V	N	D	F	P	Y	F	G	R	L	K	T	V	K	Q	E	I	K	E	S	V	F	S	S	K	A	Y	G	T	R	E	T	K	N	V	N
Template Known Secondary structure														.	.	.	.	.	.			S					S	S	T	T	T	T												T	T		T	T		S			S	S	B	T	T					B								T	T	T								B
Template Predicted Secondary structure														.	.	.	.	.	.
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.							.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.													.	.	.	.	.	.	.	190	.	.	.	.	.	.	.						.	.	200	.	.
Predicted Secondary structure																																	.												.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Query SS confidence																																	.												.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Query Sequence		N	P	F	H	P	F	A	T	F	D	T	A	A	L	A	G	L	A	L	G	Q	T	V	L	S	K	A	C	Q	T	A	.	G	M	D	F	D	S	T	Q	A	H	S	.	.	.	.	.	.	.	.	.	.	.	.	A	L	Y	D	T	E	R	T	A	V	L	F	C	E	I	.	.	.	.	.	V	N	R	W	K
Query Conservation																																	.												.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Alig confidence																																	.												.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template Conservation
Template Sequence		I	D	G	R	L	Q	L	D	L	L	Q	F	I	Q	R	E	Y	K	L	R	S	Y	T	L	N	A	V	S	A	H	F	L	G	E	Q	S	I	I	S	D	L	Q	N	G	D	S	E	T	R	R	R	L	A	V	Y	C	L	K	D	A	Y	L	P	L	R	L	M	E	K	L	M	A	L	V	N	Y	T	E	M	A
Template Known Secondary structure			T	T																	S																							T	S																										T	T
Template Predicted Secondary structure
Template SS confidence
		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
		203	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	G	G	W	P	L	S	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	V	T	G	V	P	F	S	Y	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		542	.	.	.	.	.	.	.	550	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions