Job Description P30014 Confidence 99.66% Date Thu Jan 5 11:45:43 GMT 2012 Rank 21 Aligned Residues 193 % Identity 15% Template c2p51A_ PDB info PDB header:hydrolase, gene regulation Chain: A: PDB Molecule:spcc18.06c protein; PDBTitle: crystal structure of the s. pombe pop2p deadenylation2 subunit Resolution 1.40 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.																						.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Query Sequence		N	A	Q	L	T	G	L	C	D	R	F	R	G	F	Y	P	V	V	I	D	V	E	T	A	G	F	N	A	K	T	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	E	I	A	A	I	T	L	K	M	D	E	Q	G	W	L	.	M	P	D	T	T	L	H	F	H
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation
Template Sequence		Q	Q	E	M	N	L	I	M	S	L	I	E	R	Y	P	V	V	S	M	D	T	E	F	P	G	V	V	A	R	P	L	G	V	F	K	S	S	D	D	Y	H	Y	Q	T	L	R	A	N	V	D	S	L	K	I	I	Q	I	G	L	A	L	S	D	E	E	G	N	A	P	V	E	A	C	T	W	Q	F	N	F	T
Template Known Secondary structure												T	T	T	S																		S			S	S	S															S												T	T	S				T	T		S						B
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.				.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.
Query SS confidence																		.	.	.
Query Sequence		V	E	P	F	V	G	A	N	L	Q	P	E	A	L	A	F	.	.	.	N	G	I	D	P	N	D	P	D	R	G	A	V	S	E	Y	E	A	L	H	E	I	F	K	V	V	R	K	G	I	K	A	S	G	C	N	R	A	I	M	V	A	H	N	A	N	F	D	H	S	F	M	M	A	A	A	E	R	A	S	L
Query Conservation																		.	.	.
Alig confidence									.									.	.	.																.	.	.	.	.
Template Conservation									.																											.	.	.	.	.
Template Sequence		F	N	L	Q	D	D	M	.	Y	A	P	E	S	I	E	L	L	T	K	S	G	I	D	F	K	K	H	Q	E	V	G	I	E	P	.	.	.	.	.	A	D	F	A	E	L	L	I	G	S	G	L	V	L	Q	E	E	V	T	W	I	T	F	H	S	G	Y	D	F	A	Y	L	L	K	A	M	T	Q	I	P	L
Template Known Secondary structure				T	T	T	S		.												T	T											B			.	.	.	.	.									T	T	T	S	S	S		T	T						S	S															S
Template Predicted Secondary structure									.																											.	.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.						.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		139	140	.	.	.	.	.	.	.	.									.	150	.	.	.	.	.	.	.		.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.										.
Query SS confidence												.	.	.	.	.	.	.	.										.
Query Sequence		K	R	N	P	F	H	P	F	A	T	.	.	.	.	.	.	.	.	F	D	T	A	A	L	A	G	L	.	A	L	G	Q	T	V	L	S	K	A	C	Q	T	A	G	M	D	F	D	S	T	Q	A	H	S	A	L	Y	D	T	E	R	T	A	V	L	F	C	E	I	V	N	R	W	K	R
Query Conservation												.	.	.	.	.	.	.	.										.
Alig confidence												.	.	.	.	.	.	.	.										.																						.
Template Conservation																																																			.
Template Sequence		P	A	E	Y	E	E	F	Y	K	I	L	C	I	Y	F	P	K	N	Y	D	I	K	Y	I	M	K	S	V	L	N	N	S	K	G	L	Q	D	I	A	D	D	L	Q	I	H	R	I	G	P	.	Q	H	Q	A	G	S	D	A	L	L	T	A	R	I	F	F	E	I	R	S	R	Y	F	D
Template Known Secondary structure			S	S												S	S	S									T	T	T	T													T	T					S		.	T	T	S																					T
Template Predicted Secondary structure																																																			.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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