Return to main results Retrieve Phyre Job Id

Job DescriptionP30014
Confidence97.19%DateThu Jan 5 11:45:43 GMT 2012
Rank44Aligned Residues153
% Identity15%Templatec2hbkA_
PDB info PDB header:hydrolase, gene regulationChain: A: PDB Molecule:exosome complex exonuclease rrp6; PDBTitle: structure of the yeast nuclear exosome component, rrp6p,2 reveals an interplay between the active site and the hrdc3 domain; protein in complex with mn
Resolution2.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60....... ..70.........
Predicted Secondary structure 



























.




Query SS confidence 


































































.











Query Sequence  MSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVG. ANLQPEALAFNG
Query Conservation                     



 




      






       
 
         
 
   .  
      
 
Alig confidence 

































...











.........








.











Template Conservation 


   
  
   
     



 
     

 
...  






   .........  


 
 
   
  
  

 
Template Sequence  VDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYG. . . IVCLMQISTRER. . . . . . . . . DYLVDTLKLRENLHILNEVFTN
Template Known Secondary structure 
STT
S
SSSSS
...
SS
.........TTTTTTTGGGGT
Template Predicted Secondary structure 











...


.........






Template SS confidence 















































































   216...220.........230.........240......... 250.........260. ........270.........280...
 
   80.........90.........100.........110.........120.........130.........140.........150.........
Predicted Secondary structure 

























Query SS confidence 















































































Query Sequence  IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLAL
Query Conservation 
    
                 
             

 

  

   
                              
Alig confidence  .................................























........














Template Conservation  .................................  
 

 
 
  

  
 
  

 ........  




  

  
 
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PSIVKVFHGAFMDIIWLQRDLGLY. . . . . . . . VVGLFDTYHASKAIG
Template Known Secondary structure  .................................TTSSS



........
SST
Template Predicted Secondary structure  .................................





........





Template SS confidence 















































































   284.....290.........300....... ..310.........320..
 
   160 .........170. ........ 180.........190.........200......
Predicted Secondary structure 
.



.







..............





Query SS confidence 
.










.







. . . . . . . . . . . . . .


























Query Sequence  G. QTVLSKACQTA. GMDFDSTQ. . . . . . . . . . . . . . AHSALYDTERTAVLFCEIVNRWKRLGG
Query Conservation   .   
  
    .

      ..............

 

 

  

 
   
         
Alig confidence 
.










.







..............


























Template Conservation      

  
      
 


  
 


  


   

 


 

 


 

  
   
     
Template Sequence  LPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIESNK
Template Known Secondary structure 
S

S





TTTTS
TT
SS

TTT
Template Predicted Secondary structure 




















Template SS confidence 






























































   323......330.........340.........350.........360.........370.........380.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions