 |
Job Description | P30014 | Confidence | 92.83% | Date | Thu Jan 5 11:45:43 GMT 2012 |
Rank | 50 | Aligned Residues | 96 |
% Identity | 19% | Template | c1s5jA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:dna polymerase i; |
PDBTitle: insight in dna replication: the crystal structure of dna2 polymerase b1 from the archaeon sulfolobus solfataricus
|
Resolution | 2.40 Å |
|
 |
  |   |
20 | . | . | . | . | . | . | |
|
|
|
. | . | . | 30 | . | . | . | . | . | |
|
|
|
. | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
| . | . | . | . |
|
|
|
|
|
|
|
|  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | V | I | D | V | E | T | . |
. |
. |
. |
A | G | F | N | A | K | T | D | A | . |
. |
. |
. |
L | L | E | I | A | A | I | T | L | K | M | D | E | Q | G | W | L | M | P | D | T | T | L | H | F | H | V | E | P | F | V | G | A | N | L | Q | P | E | A | L | A | F | N | G | I | D | P | N | D | P | D | R | G | A | V | S |
Query Conservation |   |
|
|
|
|   |
|
| . | . | . | . |
|
|
|   |   |   |   |   |   | . | . | . | . |
|
|
|
|
|
|
|   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |
|   |   |   |   |   |   |
|   |
|
|   |   |   |   |
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
  |
|   |
|
|
|   |   |
|   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Sequence |   |
V | A | I | D | I | E | V | Y | T | P | V | K | G | R | I | P | D | S | Q | K | A | E | F | P | I | I | S | I | A | L | A | G | S | D | G | L | K | K | V | L | V | L | N | R | N | D | V | N | E | G | S | V | K | L | D | G | I | S | V | E | R | F | N | T | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |
|
| S | S | S | S |
|
|
|
| T | T | T |
|
| S |
|  |  |  |  |  |  |  |  | T | T | S |
|  |  |  |  |  |  |
| S | S |
|
|
|
|
|
|  |  |  | T | T |  |  |  |  |  |  | S | S |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
228 | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |
  |   |
92 | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | |
. | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | Y | E | A | L | H | E | I | F | K | V | V | R | K | G | I | K | A | S | G | C | N | R | A | I | M | V | A | H | N | A | . |
N | F | D | H | S | F | M | M | A | A | A | E | R | A | S | L | K |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|   | . |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
. | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . |   |   |
|
|   |   |
|   |   |   |
| . | . | . | . |   |
|
|
|
|
|   |
|
|
|   |   |   |
|
|
|   |
|
|   |   |
|   |   |   |
|
|
|   |
Template Sequence |   |
. |
. |
. |
. |
. |
Y | E | L | L | G | R | F | F | D | I | L | . |
. |
. |
. |
L | E | Y | P | I | V | L | T | F | N | G | D | D | F | D | L | P | Y | I | Y | F | R | A | L | K | L | G | Y | F |
Template Known Secondary structure |   |
. | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | T | T |
| S |  |  |  |  | S | S | T | T | T | T |  |  |  |  |  |  |  |  |  |  | T | T | T |
|
|
Template Predicted Secondary structure |   |
. | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
293 | . | . | . | . | . | . | 300 | . | . | . | |
|
|
|
. | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|