Job Description P75817 Confidence 99.09% Date Thu Jan 5 12:14:29 GMT 2012 Rank 194 Aligned Residues 156 % Identity 19% Template c3khkA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:type i restriction-modification system PDBTitle: crystal structure of type-i restriction-modification system2 methylation subunit (mm_0429) from methanosarchina mazei. Resolution 2.55 Å

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		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.																		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	Q	L	Y	A	T	A	R	D	W	V	R	Q	L	P	V	K	H	M	W	D	L	F	C	G	V	G	G	F	G	L	H	C	A	T	P	D	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	T	G	I	E	I	A	S	E	A	I	A	C	A	K	Q	S	A	A	E	L	G	L	T
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.
Template Sequence		K	S	I	V	T	L	I	V	E	M	L	E	P	Y	K	G	.	R	V	Y	D	P	A	M	G	S	G	G	F	F	V	S	S	D	K	F	I	E	K	H	A	N	V	K	H	Y	N	A	S	E	Q	K	K	Q	I	S	V	Y	G	Q	E	S	N	P	T	T	W	K	L	A	A	M	N	M	V	I	R	G	I	D
Template Known Secondary structure																S		.					S	S		T	T																			T	S						G	G	G																							T	T
Template Predicted Secondary structure																		.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
			282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.																															.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure		.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	R	L	Q	F	Q	A	L	D	S	T	Q	F	A	T	A	Q	G	D	V	P	E	L	V	L	V	N	P	P	R	R	G	I	G	K	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	C	D	Y	L	S	T	M	A	P	R	F	I	I
Query Conservation		.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	N	F	G	K	K	N	A	D	S	F	L	D	D	Q	H	P	D	L	R	A	D	F	V	M	T	N	P	P	F	N	M	K	D	W	W	H	E	K	L	A	D	D	P	R	W	T	I	N	T	N	K	R	I	L	T	P	P	T	G	N	A	N	F	A	W	M	L	H	M	L	Y	H	L	A	P	T	G	S	M
Template Known Secondary structure			B			S	S	S			T	T	T	S		S		T	T												S	S			S				G	G	G	T	T		G	G	G													T	T		T											T
Template Predicted Secondary structure
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
		331	.	.	.	.	.	.	.	.	340							.	.	.	.	.	.			.	.	.	350	.	.	.	.	.	.	.			.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.							.	.												.	.
Query SS confidence												.	.	.	.	.	.							.	.												.	.
Query Sequence		Y	S	S	C	N	A	Q	T	M	A	.	.	.	.	.	.	K	D	I	R	E	L	.	.	P	G	F	R	I	E	R	V	Q	L	F	.	.	D	M	F	P	H	T	A	H	Y	E	V	L	T	L	L	V	K	Q
Query Conservation												.	.	.	.	.	.							.	.												.	.
Alig confidence												.	.	.	.	.	.							.	.												.	.
Template Conservation
Template Sequence		A	L	L	L	A	N	G	S	M	S	S	N	T	N	N	E	G	E	I	R	K	T	L	V	E	Q	D	L	V	E	C	M	V	A	L	P	G	Q	L	F	T	N	T	Q	I	P	A	C	I	W	F	L	T	K	D
Template Known Secondary structure							T							G	G	G											T	T										T	T	B			S		S	S									S
Template Predicted Secondary structure
Template SS confidence
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions