Job Description P75817 Confidence 99.92% Date Thu Jan 5 12:14:29 GMT 2012 Rank 14 Aligned Residues 278 % Identity 15% Template c3dmgA_ PDB info PDB header:transferase Chain: A: PDB Molecule:probable ribosomal rna small subunit methyltransferase; PDBTitle: t. thermophilus 16s rrna n2 g1207 methyltransferase (rsmc) in complex2 with adohcy Resolution 1.55 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		C	A	L	Y	D	A	G	R	C	R	S	C	Q	W	I	M	Q	P	I	P	E	Q	L	S	A	K	T	A	D	L	K	N	L	L	A	D	F	P	V	E	E	W	C	A	P	V	S	G	P	E	Q	G	F	R	N	K	A	K	M	V	V	S	G	S	V	E	K	P	L	L	G	M	L	.	H	R	D	G	T	P
Query Conservation																																																																											.
Alig confidence						.	.																								.	.																																											.
Template Conservation						.	.																								.	.
Template Sequence		N	P	G	V	.	.	G	W	G	S	L	P	L	E	G	R	M	A	V	E	R	L	E	T	S	R	A	A	F	.	.	R	C	L	T	A	S	G	L	Q	A	R	L	A	L	P	W	E	A	A	A	G	A	Y	D	L	V	V	L	A	L	P	A	G	R	G	T	A	Y	V	Q	A	S	L	V	A	A	A	R	A
Template Known Secondary structure		S		T	T	.	.	S	T	T	T	G	G	G	B	T	T	B								B					.	.						T	T								G	G	G	S		T	T											G	G	G
Template Predicted Secondary structure						.	.																								.	.
Template SS confidence
		53	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.			80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	L	C	D	C	P	L	Y	P	A	S	F	A	P	V	F	A	A	L	K	P	F	I	A	R	A	G	L	T	P	Y	N	V	A	R	K	R	G	E	L	K	Y	I	L	L	T	E	S	Q	S	D	G	G	M	M	L	R	F	V	L	R	S	D	T	K	L	A	Q	L	R	K	A	L	P	W	L	H	E	Q
Query Conservation
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	R	M	G	G	R	L	Y	L	A	G	D	K	N	K	G	F	E	R	Y	F	K	E	A	R	A	L	L	G	Y	G	V	V	V	R	R	E	G	P	Y	R	V	A	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure														G	G	G	T													S									T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.			.	.	.	.	.	.
Predicted Secondary structure																																																								.																		.	.
Query SS confidence																																																								.																		.	.
Query Sequence		L	P	Q	L	K	V	I	T	V	N	I	Q	P	V	H	M	A	I	M	E	G	E	T	E	I	Y	L	T	E	Q	Q	A	L	A	E	R	F	N	D	V	P	L	W	I	R	P	Q	S	F	F	Q	T	N	P	.	A	V	A	S	Q	L	Y	A	T	A	R	D	W	V	R	Q	L	.	.	P	V	K	H	M	W
Query Conservation																																																								.																		.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.																		.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	E	K	E	A	P	P	L	P	S	L	W	R	A	F	S	A	R	I	L	G	A	E	Y	T	F	H	H	L	P	G	V	F	S	A	G	K	V	D	P	A	S	L	L	L	L	E	A	L	Q	E	R	L	G	P	E	G	V	R	G	R	Q	V	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S																	T	T									T	T		T	T	T	T	S																		T	T	T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		D	L	F	C	G	V	G	G	F	G	L	H	C	A	T	P	D	M	Q	L	T	G	I	E	I	A	S	E	A	I	A	C	A	K	Q	S	A	A	E	L	G	L	T	R	L	Q	F	Q	A	L	D	S	T	Q	F	A	T	A	Q	G	D	V	P	E	L	V	L	V	N	P	P	R	R	G	I	G	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																																												.													.																					.	.	.	.
Template Conservation																																												.													.
Template Sequence		D	L	G	A	G	Y	G	A	L	T	L	P	L	A	R	M	G	A	E	V	V	G	V	E	D	D	L	A	S	V	L	S	L	Q	K	G	L	E	A	N	A	L	.	K	A	Q	A	L	H	S	D	V	D	E	A	.	L	T	E	E	A	R	F	D	I	I	V	T	N	P	P	F	H	V	G	G	A	V	I	L
Template Known Secondary structure				T		T	T	S	T	T							T	T								S	B														T	T		.								S	T	T	T	T	.	S		T	T														T	T		S	S
Template Predicted Secondary structure																																												.													.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
						315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	K	P	L	C	D	Y	L	S	T	M	A	P	R	F	I	I	Y	S	S	C	N	A
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		D	V	A	Q	A	F	V	N	V	A	A	A	R	L	R	P	G	G	V	F	F	L	V	S	N	P
Template Known Secondary structure																											T
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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