Job Description P75817 Confidence 100.00% Date Thu Jan 5 12:14:29 GMT 2012 Rank 5 Aligned Residues 317 % Identity 15% Template c3c0kB_ PDB info PDB header:transferase Chain: B: PDB Molecule:upf0064 protein yccw; PDBTitle: crystal structure of a ribosomal rna methyltranferase Resolution 2.00 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.													.	.	.	.	.	.	.	80		.	.	.	.					.	.	.	.	.	90	.	.					.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.									.					.	.	.	.									.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.									.					.	.	.	.									.	.	.	.
Query Sequence		S	G	P	E	Q	G	F	R	N	K	A	K	M	V	V	S	G	S	V	E	K	P	L	L	.	.	.	.	.	.	.	.	.	.	.	.	G	M	L	H	R	D	G	T	.	P	E	D	L	.	.	.	.	C	D	C	P	L	Y	P	A	.	.	.	.	S	F	A	P	V	F	A	A	L	K	P	F	I	A	R
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.									.					.	.	.	.									.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.									.					.	.	.	.									.	.	.	.
Template Conservation
Template Sequence		R	R	H	P	W	V	F	S	G	A	V	A	R	X	E	G	K	A	S	L	G	E	T	I	D	I	V	D	H	Q	G	K	W	L	A	R	G	A	Y	S	P	A	S	Q	I	R	A	R	V	W	T	F	D	P	S	E	S	I	D	I	A	F	F	S	R	R	L	Q	Q	A	Q	K	W	R	D	W	L	A	Q	K
Template Known Secondary structure		T	T		S				G	G	G						S				T	T								T	T											T	T	S	S	S							S		T	T				S
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		A	G	L	T	P	Y	N	V	A	R	K	R	G	.	E	L	K	Y	I	L	L	T	E	S	Q	S	D	G	G	M	M	L	R	F	V	L	R	S	D	T	K	L	A	Q	L	R	K	A	L	P	W	L	H	E	Q	L	P	Q	L	K	V	I	T	V	N	I	Q	P	V	H	M	A	I	M	E	G	E	T	E	I
Query Conservation															.
Alig confidence															.											.	.	.						.
Template Conservation																										.	.	.						.
Template Sequence		D	G	L	D	S	Y	R	L	I	A	G	E	S	D	G	L	P	G	I	T	I	D	R	F	.	.	.	G	N	F	L	V	.	L	Q	L	L	S	A	G	A	E	Y	Q	R	A	A	L	I	S	A	L	Q	T	L	Y	P	E	C	S	I	Y	D	R	S	D	V	A	V	R	K	K	E	G	X	E	L	T	Q	G
Template Known Secondary structure			T		S							G	G	G	G	T		T	T							.	.	.	T	T				.					S						T													T	T										T					T	T
Template Predicted Secondary structure																										.	.	.						.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120				.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		187	.	.	190	.	.	.				.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.
Predicted Secondary structure									.	.	.																																																														.
Query SS confidence									.	.	.																																																														.
Query Sequence		Y	L	T	E	Q	Q	A	.	.	.	L	A	E	R	F	N	D	V	P	L	W	I	R	P	Q	S	F	F	Q	T	N	P	A	V	A	S	Q	L	Y	A	T	A	R	D	W	V	R	Q	L	P	V	K	H	M	W	D	L	F	C	G	V	G	G	F	G	L	H	C	A	T	P	.	D	M	Q	L	T	G	I	E
Query Conservation									.	.	.																																																														.
Alig confidence									.	.	.																																						.	.																							.
Template Conservation																																																	.	.
Template Sequence		P	V	T	G	E	L	P	P	A	L	L	P	I	E	E	H	G	X	K	L	L	V	D	I	Q	H	G	H	K	T	G	Y	Y	L	D	Q	R	D	S	R	L	A	T	R	R	Y	V	.	.	E	N	K	R	V	L	N	C	F	S	Y	T	G	G	F	A	V	S	A	L	X	G	G	C	S	Q	V	V	S	V	D
Template Known Secondary structure					S					S	S						T	T							T	T	T	S	S	T	T	S	S		G	G	G												.	.	T	T							T		T	T	T									T	T		S
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280			.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.				.	.	300	.	.	.	.	.	.	.	.	.	310													.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure																				.	.																		.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.																		.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	A	S	E	A	I	A	C	A	K	Q	S	A	A	E	L	G	L	.	.	T	R	L	Q	F	Q	A	L	D	S	T	Q	F	A	T	A	Q	.	.	.	G	D	V	P	E	L	V	L	V	N	P	P	R	.	.	.	.	.	.	.	.	.	.	.	.	R	G	I	G	K	P	L	C	D	Y	L	S	T	M	A
Query Conservation																				.	.																		.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.																		.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	S	Q	E	A	L	D	I	A	R	Q	N	V	E	L	N	K	L	D	L	S	K	A	E	F	V	R	D	D	V	F	K	L	L	R	T	Y	R	D	R	G	E	K	F	D	V	I	V	X	D	P	P	K	F	V	E	N	K	S	Q	L	X	G	A	C	R	G	Y	K	D	I	N	X	L	A	I	Q	L	L	N
Template Known Secondary structure		S															T	T			G	G	G						S												T	T											S	S		S	S	T	T		S	S	S				T												T
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		326	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.								.	.	.	350	.	.	.	.					.	.	.	.	.						360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure				.																				.	.	.	.	.	.	.									.	.	.	.						.	.	.	.	.
Query SS confidence				.																				.	.	.	.	.	.	.									.	.	.	.						.	.	.	.	.
Query Sequence		P	R	.	F	I	I	Y	S	S	C	N	A	Q	T	M	A	K	D	I	R	E	L	.	.	.	.	.	.	.	P	G	F	R	I	E	R	V	.	.	.	.	Q	L	F	D	M	.	.	.	.	.	F	P	H	T	A	H	Y	E	V	L	T	L
Query Conservation				.																				.	.	.	.	.	.	.									.	.	.	.						.	.	.	.	.
Alig confidence				.																				.	.	.	.	.	.	.									.	.	.	.						.	.	.	.	.
Template Conservation
Template Sequence		E	G	G	I	L	L	T	F	S	C	S	G	L	X	T	S	D	L	F	Q	K	I	I	A	D	A	A	I	D	A	G	R	D	V	Q	F	I	E	Q	F	R	Q	A	A	D	H	P	V	I	A	T	Y	P	E	G	L	Y	L	K	G	F	A	C
Template Known Secondary structure													T	T																		T													T	T	S				T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions