Job Description P75817 Confidence 100.00% Date Thu Jan 5 12:14:29 GMT 2012 Rank 4 Aligned Residues 345 % Identity 20% Template c3bt7A_ PDB info PDB header:transferase/rna Chain: A: PDB Molecule:trna (uracil-5-)-methyltransferase; PDBTitle: structure of e. coli 5-methyluridine methyltransferase trma2 in complex with 19 nucleotide t-arm analogue Resolution 2.43 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		Q	W	I	M	Q	P	I	P	E	Q	L	S	A	K	T	A	D	L	K	N	L	L	A	D	F	P	V	E	E	W	C	A	P	V	S	G	P	E	Q	G	F	R	N	K	A	K	M	V	V	S	G	S	V	E	K	P	L	L	G	M	L	H	R	D	G	T	.	P	E	D	L	C	D	C	P	L	Y	P	A	S
Query Conservation																																																																				.
Alig confidence																															.																																					.
Template Conservation																															.
Template Sequence		H	L	P	T	E	Q	Y	E	A	Q	L	A	E	K	V	V	R	L	Q	S	M	M	A	P	F	S	D	L	V	.	P	E	V	F	R	S	P	V	S	H	Y	R	M	R	A	E	F	R	I	W	H	D	G	D	D	L	Y	H	I	I	F	D	Q	Q	T	K	S	R	I	R	V	D	S	F	P	A	A	S	E	L
Template Known Secondary structure		S			G	G	G																	T	T	T					.								S	S	S		B	S										T	T									T	T	T							S			T	T	B
Template Predicted Secondary structure																															.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	P	V	F	A	A	L	K	P	F	I	A	R	A	G	L	T	P	Y	N	V	A	R	K	R	G	E	L	K	Y	I	L	L	T	E	S	Q	S	D	G	G	M	M	L	R	F	V	L	R	S	D	T	K	L	A	Q	L	R	K	A	L	P	W	L	H	E	Q	L	P	Q	L	K	V	I	T	V	N	I	Q
Query Conservation
Alig confidence																						.	.	.	.	.	.	.											.
Template Conservation																						.	.	.	.	.	.	.											.
Template Sequence		I	N	Q	L	M	T	A	M	I	A	G	V	R	N	N	P	V	L	R	H	.	.	.	.	.	.	.	K	L	F	Q	I	D	Y	L	T	T	.	L	S	N	Q	A	V	V	S	L	L	Y	H	K	K	L	D	D	E	W	R	Q	E	A	E	A	L	R	D	A	L	R	A	Q	N	L	N	V	H	L	I	G	R
Template Known Secondary structure														T	T						T	.	.	.	.	.	.	.	T										.	T	T										S	S																			T	T	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.											.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.								.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	H	M	A	I	M	E	G	E	T	E	I	Y	L	T	E	Q	Q	A	L	A	E	R	F	N	D	V	P	L	W	I	R	P	Q	S	F	F	Q	T	N	P	A	V	A	S	Q	L	Y	A	T	A	R	D	W	V	R	Q	L	P	V	K	H	M	W	D	L	F	C	G	V	G	G	F	G	L	H	C	A	T
Query Conservation
Alig confidence													.	.	.	.																																														.
Template Conservation													.	.	.	.																																														.
Template Sequence		A	T	K	T	K	I	E	L	D	Q	D	.	.	.	.	Y	I	D	E	R	L	P	V	A	G	K	E	M	I	Y	R	Q	V	E	N	S	F	T	Q	P	N	A	A	M	N	I	Q	M	L	E	W	A	L	D	V	T	K	G	S	K	.	G	D	L	L	E	L	Y	C	G	N	G	N	F	S	L	A	L	A	R
Template Known Secondary structure			T	T					S	S		S	.	.	.	.								B	T	T	B								T	T	S				S	B															T	T	T			.	S						S		T	T	S							G	G
Template Predicted Secondary structure													.	.	.	.																																														.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.					.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.																300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	D	M	Q	L	T	G	I	E	I	A	S	E	A	I	A	C	A	K	Q	S	A	A	E	L	G	L	T	R	L	Q	F	Q	A	L	D	S	T	Q	F	A	T	A	Q	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	E	L	V	L	V	N	P	P	R	R	G	I	G	K	P	L	C
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	F	D	R	V	L	A	T	E	I	A	K	P	S	V	A	A	A	Q	Y	N	I	A	A	N	H	I	D	N	V	Q	I	I	R	M	A	A	E	E	F	T	Q	A	M	N	G	V	R	E	F	N	R	L	Q	G	I	D	L	K	S	Y	Q	C	E	T	I	F	V	D	P	P	R	S	G	L	D	S	E	T	E
Template Known Secondary structure		G	S	S																						T	T			S								S								S	S					T	T	G	G	G	S		G	G	G												T	T
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		D	Y	L	S	T	M	A	P	R	F	I	I	Y	S	S	C	N	A	Q	T	M	A	K	D	I	R	E	L	.	P	G	F	R	I	E	R	V	Q	L	F	D	M	F	P	H	T	A	H	Y	E	V	L	T	L	L	V	K	Q
Query Conservation																														.
Alig confidence					.	.																								.
Template Conservation					.	.
Template Sequence		K	M	V	.	.	Q	A	Y	P	R	I	L	Y	I	S	C	N	P	E	T	L	C	K	N	L	E	T	L	S	Q	T	H	K	V	E	R	L	A	L	F	D	Q	F	P	Y	T	H	H	M	Q	C	G	V	L	L	T	A	K
Template Known Secondary structure					.	.	T	T	S	S							S																											S	T	T	S	S
Template Predicted Secondary structure					.	.
Template SS confidence
		311	.	.			.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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