Job Description P75817 Confidence 99.69% Date Thu Jan 5 12:14:29 GMT 2012 Rank 40 Aligned Residues 141 % Identity 13% Template c3axtA_ PDB info PDB header:transferase Chain: A: PDB Molecule:probable n(2),n(2)-dimethylguanosine trna methyltransferase PDBTitle: complex structure of trna methyltransferase trm1 from aquifex aeolicus2 with s-adenosyl-l-methionine Resolution 2.49 Å

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		197	.	.	200	.	.	.	.	.										.	.	.	.	210	.					.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.				.	.	.	260
Predicted Secondary structure											.	.	.	.	.	.	.	.	.							.	.	.	.																																														.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.							.	.	.	.																																														.	.	.
Query Sequence		R	F	N	D	V	P	L	W	I	.	.	.	.	.	.	.	.	.	R	P	Q	S	F	F	.	.	.	.	Q	T	N	P	A	V	A	S	Q	L	Y	A	T	A	R	D	W	V	R	Q	L	P	V	K	H	M	W	D	L	F	C	G	V	G	G	F	G	L	H	C	A	T	P	D	M	.	.	.	Q	L	T	G
Query Conservation											.	.	.	.	.	.	.	.	.							.	.	.	.																																														.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.							.	.	.	.																				.	.																									.	.	.
Template Conservation																																																	.	.
Template Sequence		Q	E	G	I	A	K	I	I	V	P	E	I	P	K	T	V	S	S	D	M	P	V	F	Y	N	P	R	M	R	V	N	R	D	L	A	V	L	G	L	E	Y	L	C	K	K	L	G	.	.	R	P	V	K	V	A	D	P	L	S	A	S	G	I	R	A	I	R	F	L	L	E	T	S	C	V	E	K	A	Y	A
Template Known Secondary structure				T	T										S	S			T	T			S	S			G	G	G																				.	.	S							S	S		T	T	T											S
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.			.	.	.	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.		.	.
Predicted Secondary structure																								.	.													.																																									.
Query SS confidence																								.	.													.																																									.
Query Sequence		I	E	I	A	S	E	A	I	A	C	A	K	Q	S	A	A	E	L	G	L	T	R	.	.	L	Q	F	Q	A	L	D	S	T	Q	F	A	.	T	A	Q	G	D	V	P	E	L	V	L	V	N	P	P	R	R	G	I	G	K	P	L	C	D	Y	L	S	T	M	A	P	R	F	I	I	Y	S	S	C	.	N	A
Query Conservation																								.	.													.																																									.
Alig confidence																								.	.													.																			.																						.
Template Conservation																																																									.
Template Sequence		N	D	I	S	S	K	A	I	E	I	M	K	E	N	F	K	L	N	N	I	P	E	D	R	Y	E	I	H	G	M	E	A	N	F	F	L	R	K	E	W	G	F	G	F	D	Y	V	D	L	D	P	F	G	T	P	.	V	P	F	I	E	S	V	A	L	S	M	K	R	G	G	I	L	S	L	T	A	T	D	T
Template Known Secondary structure				S															T	T			G	G	G						S							T	S			S	S										S	S			.
Template Predicted Secondary structure																																																									.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		337	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	M	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	P	L	S
Template Known Secondary structure					T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions