Job Description P75817 Confidence 100.00% Date Thu Jan 5 12:14:29 GMT 2012 Rank 1 Aligned Residues 341 % Identity 26% Template c2vs1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:uncharacterized rna methyltransferase pyrab10780; PDBTitle: the crystal structure of pyrococcus abyssi trna (uracil-54,2 c5)-methyltransferase in complex with s-adenosyl-l-3 homocysteine Resolution 2.1 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	A	L	Y	D	A	G	R	C	R	S	C	Q	W	I	M	Q	P	I	P	E	Q	L	S	A	K	T	A	D	L	K	N	L	L	A	D	F	P	V	E	E	W	C	A	P	V	S	G	P	E	Q	G	F	R	N	K	A	K	M	V	V	S	G	S	V	E	K	P	L	L	G	M	L	H	R	D	G	T	P	E
Query Conservation
Alig confidence						.	.																																	.	.	.	.																								.	.	.	.
Template Conservation						.	.																																	.	.	.	.																								.	.	.	.
Template Sequence		S	P	L	R	.	.	V	K	C	G	G	C	T	L	Q	H	L	N	Y	D	Y	Q	L	E	F	K	R	K	K	L	K	R	I	L	G	F	E	V	.	.	.	.	E	V	V	P	S	P	K	I	F	G	H	R	N	R	I	D	L	A	I	T	K	D	G	.	.	.	.	I	G	F	R	E	K	W	W	K	I	V
Template Known Secondary structure			T	T	B	.	.				T	T		T	T	T	T	B																		S	S			.	.	.	.						S		S	S	S		B	S								T	T		.	.	.	.							T	T
Template Predicted Secondary structure						.	.																																	.	.	.	.																								.	.	.	.
Template SS confidence
		53	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.					.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.					.	.	.	.	.	.	.	.	120	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	C	D	C	P	L	Y	P	A	S	F	A	P	V	F	A	A	L	K	P	F	I	A	R	A	G	L	T	P	Y	N	V	A	R	K	R	G	E	L	K	Y	I	L	L	T	E	S	Q	S	D	G	G	M	M	L	R	F	V	L	R	S	D	T	K	L	A	Q	L	R	K	A	L	P	W	L	H	E	Q	L
Query Conservation
Alig confidence							.																																																															.	.	.	.	.	.	.	.	.
Template Conservation							.																																																															.	.	.	.	.	.	.	.	.
Template Sequence		D	I	D	E	P	.	V	F	G	K	T	S	R	E	A	I	E	R	L	K	E	F	I	E	E	E	K	I	S	V	W	N	I	K	K	D	E	G	F	L	R	Y	M	V	L	R	E	G	K	F	T	E	E	V	M	V	N	F	V	T	K	E	G	N	L	P	D	P	.	.	.	.	.	.	.	.	.	T	N	Y
Template Known Secondary structure							.		S		T																	T			B	B	B	T	T	T	T	B		S										T	T	T											S	S						.	.	.	.	.	.	.	.	.	G	G	G
Template Predicted Secondary structure							.																																																															.	.	.	.	.	.	.	.	.
Template SS confidence
		133	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.										200	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	L	K	V	I	T	V	N	I	Q	P	V	H	M	A	I	M	E	G	E	T	E	I	Y	L	T	E	Q	Q	A	L	A	E	R	F	N	D	V	P	L	W	I	R	P	Q	S	F	F	Q	T	N	P	A	V	A	S	Q	L	Y	A	T	A	R	D	W	V	R	Q	L	P	V	K	H	M	W	D	L	F	C
Query Conservation
Alig confidence																							.																																														.	.	.
Template Conservation																							.																																														.	.	.
Template Sequence		F	D	F	D	S	I	Y	W	S	V	N	R	S	K	S	D	V	S	Y	G	D	.	I	E	R	F	W	G	K	E	F	I	R	E	R	L	D	D	V	D	Y	L	I	H	P	N	S	F	F	Q	T	N	S	Y	Q	A	V	N	L	V	R	K	V	S	E	L	V	.	.	.	E	G	E	K	I	L	D	M	Y	S
Template Known Secondary structure				S	S									S	S	S			S				.								S							T	T							T	T	S				S	B																.	.	.		S	S						T
Template Predicted Secondary structure																							.																																														.	.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.				270	.	.	.	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	G	G	F	G	L	H	C	A	T	P	D	M	Q	L	T	G	I	E	I	A	S	E	A	I	A	C	A	K	Q	S	A	A	E	L	G	L	T	R	L	Q	F	Q	A	L	D	S	T	Q	F	A	T	A	Q	G	D	V	P	E	L	V	L	V	N	P	P	R	R	G	I	G	K	P	L	C	D	Y	L	S
Query Conservation
Alig confidence																																																			.	.	.	.
Template Conservation																																																			.	.	.	.
Template Sequence		G	V	G	T	F	G	I	Y	L	A	K	R	G	F	N	V	K	G	F	D	S	N	E	F	A	I	E	M	A	R	R	N	V	E	I	N	N	V	D	A	E	F	E	V	A	S	D	R	E	.	.	.	.	V	S	V	K	G	F	D	T	V	I	V	D	P	P	R	A	G	L	H	P	R	L	V	K	R	L	N
Template Known Secondary structure		T	T	T								T	T	T								S															T	T										T	T	T	.	.	.	.				T	T		S								T	T		S
Template Predicted Secondary structure																																																			.	.	.	.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.					.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	M	A	P	R	F	I	I	Y	S	S	C	N	A	Q	T	M	A	K	D	I	R	E	L	P	G	F	R	I	E	R	V	Q	L	F	D	M	F	P	H	T	A	H	Y	E	V	L	T	L	L
Query Conservation
Alig confidence																										.
Template Conservation																										.
Template Sequence		R	E	K	P	G	V	I	V	Y	V	S	C	N	P	E	T	F	A	R	D	V	K	M	L	.	D	Y	R	I	D	E	I	V	A	L	D	M	F	P	H	T	P	H	V	E	L	V	A	K	L
Template Known Secondary structure						S							S												T	.	T												S	T	T	S	S
Template Predicted Secondary structure																										.
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions