Job Description P75817 Confidence 95.66% Date Thu Jan 5 12:14:29 GMT 2012 Rank 322 Aligned Residues 149 % Identity 13% Template c2qy6A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0209 protein yfck; PDBTitle: crystal structure of the n-terminal domain of upf0209 protein yfck2 from escherichia coli o157:h7 Resolution 2.00 Å

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		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.								.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.															.	.	.	260	.	.				.
Predicted Secondary structure																							.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.
Query SS confidence																							.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.
Query Sequence		Q	S	F	F	Q	T	N	P	A	V	A	S	Q	L	Y	A	T	A	R	D	W	.	.	.	.	.	.	.	V	R	Q	L	P	V	K	H	M	W	D	L	F	C	G	V	G	G	F	G	L	H	C	A	T	P	D	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	T	G	I	E	.	.	.	I
Query Conservation																							.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.
Alig confidence																							.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.
Template Conservation
Template Sequence		D	V	Y	F	S	N	D	N	G	L	E	E	T	R	Y	V	F	L	G	G	N	Q	L	E	A	R	F	P	E	H	P	H	P	L	F	V	V	A	E	S	G	F	G	T	G	L	N	F	L	T	L	W	Q	A	F	D	Q	F	R	E	A	H	P	Q	A	Q	L	Q	R	L	H	F	I	S	F	E	K	F	P	L
Template Known Secondary structure				S	S		T	T	T													T	T					G	G	G		S	S	S							S			T	T	S																		T	T	S	S											S	S
Template Predicted Secondary structure
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		264	.	.	.	.	.	270												.	.	.	.	.	.	.	.	.	280	.													.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.					.	300	.	.	.	.	.	.	.	.							.	310
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.											.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.											.	.	.	.	.	.
Query Sequence		A	S	E	A	I	A	C	.	.	.	.	.	.	.	.	.	.	.	A	K	Q	S	A	A	E	L	G	L	T	.	.	.	.	.	.	.	.	.	.	.	.	R	L	Q	F	Q	A	L	D	S	T	Q	F	A	T	A	Q	G	.	.	.	.	D	V	P	E	L	V	L	V	N	P	.	.	.	.	.	.	P	R
Query Conservation									.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.											.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.											.	.	.	.	.	.
Template Conservation
Template Sequence		T	R	A	D	L	A	L	A	H	Q	H	W	P	E	L	A	P	W	A	E	Q	L	Q	A	Q	W	P	M	P	L	P	G	C	H	R	L	L	L	D	R	V	T	L	D	L	W	F	G	D	I	N	E	L	I	S	Q	L	D	D	S	L	N	Q	K	V	D	A	W	F	L	D	G	F	A	P	A	K	N	P	D
Template Known Secondary structure											T	T		G	G	G										T				S		S																	S						G	G	G	S		G	G	G	T	T									S	S		T	T	T		G	G
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	I	G	K	P	L	C	D	Y	L	S	T	M	A	P	R	F	I	I	Y	S	S	C	N	A	Q	T	M	A	K	D	I	R	E	L	P	G	F	R	I	E	R	V	Q	L	F
Query Conservation
Alig confidence																																			.
Template Conservation																																			.
Template Sequence		M	W	T	Q	N	L	F	N	A	M	A	R	L	A	R	P	G	G	T	L	A	T	F	T	S	A	G	F	V	R	R	G	L	.	Q	E	A	G	F	T	M	Q	K	R	K	G	F
Template Known Secondary structure		G																						S											.				T									S
Template Predicted Secondary structure																																			.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions