Job Description P75817 Confidence 100.00% Date Thu Jan 5 12:14:29 GMT 2012 Rank 7 Aligned Residues 320 % Identity 16% Template c2as0A_ PDB info PDB header:transferase Chain: A: PDB Molecule:hypothetical protein ph1915; PDBTitle: crystal structure of ph1915 (apc 5817): a hypothetical rna2 methyltransferase Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		49	50	.	.	.	.	.	.	.	.	.	60												.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.					80	.	.	.	.	.	.	.	.	.	90	.	.						.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.												.									.	.	.	.														.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.												.									.	.	.	.														.	.	.	.	.
Query Sequence		S	G	P	E	Q	G	F	R	N	K	A	K	.	.	.	.	.	.	.	.	.	.	.	M	V	V	S	G	S	V	E	K	P	L	.	L	G	M	L	H	R	D	G	.	.	.	.	T	P	E	D	L	C	D	C	P	L	Y	P	A	.	.	.	.	.	S	F	A	P	V	F	A	A	L	K	P	F	I	A	R
Query Conservation														.	.	.	.	.	.	.	.	.	.	.												.									.	.	.	.														.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.												.									.	.	.	.														.	.	.	.	.
Template Conservation
Template Sequence		K	G	A	X	I	V	F	K	K	G	V	V	R	V	E	G	D	I	K	P	G	D	I	V	E	V	Y	T	R	G	G	K	F	L	G	K	G	F	A	N	P	N	S	N	I	X	V	R	I	V	T	K	D	K	D	V	E	I	N	K	D	L	F	K	R	R	I	K	K	A	N	E	Y	R	K	K	V	L	K	Y
Template Known Secondary structure		T	T						G	G	G						S				T	T								T	T											T	T	S	S								S		T	T				S																		T	S
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																.																																																		.
Query SS confidence																.																																																		.
Query Sequence		A	G	L	T	P	Y	N	V	A	R	K	R	G	E	.	L	K	Y	I	L	L	T	E	S	Q	S	D	G	G	M	M	L	R	F	V	L	R	S	D	T	K	L	A	Q	L	R	K	A	L	P	W	L	H	E	Q	L	P	Q	L	K	V	I	T	V	.	N	I	Q	P	V	H	M	A	I	M	E	G	E	T	E
Query Conservation																.																																																		.
Alig confidence				.	.											.												.	.	.	.																																			.
Template Conservation				.	.																							.	.	.	.
Template Sequence		T	N	.	.	V	Y	R	X	V	Y	G	E	A	D	Y	L	P	G	L	I	V	D	R	F	N	D	.	.	.	.	I	A	S	L	Q	I	S	S	A	G	X	E	R	F	K	L	D	V	A	E	A	I	X	E	V	E	P	G	I	E	T	V	F	E	K	N	T	G	R	S	R	R	R	E	G	L	P	E	I	E
Template Known Secondary structure			S	.	.							G	G	G	G	T		T	T							T	T	.	.	.	.													T	T													T	T										S						T	T
Template Predicted Secondary structure				.	.																							.	.	.	.
Template SS confidence
		96	.			.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.					120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		I	Y	L	T	E	Q	Q	A	L	A	E	R	F	N	D	V	P	L	W	I	R	P	Q	S	F	F	Q	T	N	P	A	V	A	S	Q	L	Y	A	T	A	R	D	W	V	R	Q	L	P	V	K	H	M	W	D	L	F	C	G	V	G	G	F	G	L	H	C	A	T	P	.	D	M	Q	L	T	G	I	E	I	A
Query Conservation																																																																							.
Alig confidence																																																																							.
Template Conservation
Template Sequence		R	V	L	L	G	K	E	K	Y	R	T	I	I	Q	E	G	R	A	K	F	I	V	D	X	R	G	Q	K	T	G	F	F	L	D	Q	R	E	N	R	L	A	L	E	K	W	V	Q	P	G	D	R	V	L	D	V	F	T	Y	T	G	G	F	A	I	H	A	A	I	A	G	A	D	E	V	I	G	I	D	K	S
Template Known Secondary structure							S										T	T							S	S	S	S	S	S				S	T	T								G	G	G			T	T						T	T		T	T	T									T	T		S							S
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.				.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.													.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.												.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.												.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	E	A	I	A	C	A	K	Q	S	A	A	E	L	G	L	T	R	.	L	Q	F	Q	A	L	D	S	T	Q	F	.	.	.	A	T	A	Q	G	D	V	P	E	L	V	L	V	N	P	P	R	R	G	I	G	K	P	.	.	.	.	.	.	.	.	.	.	.	.	L	C	D	Y	L	S	T	M	A	P	R	F
Query Conservation																				.												.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.												.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	R	A	I	E	T	A	K	E	N	A	K	L	N	G	V	E	D	R	X	K	F	I	V	G	S	A	F	E	E	X	E	K	L	Q	K	K	G	E	K	F	D	I	V	V	L	D	P	P	A	F	V	Q	H	E	K	D	L	K	A	G	L	R	A	Y	F	N	V	N	F	A	G	L	N	L	V	K	D	G	G
Template Known Secondary structure															T	T		G	G	G						S												T	T													S		S	S	G	G	G																	T	T
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
			329	330	.	.	.	.	.	.	.	.								.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.						.	.	.	.						.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure		.											.	.	.	.	.	.	.																	.	.	.	.	.					.	.	.	.	.
Query SS confidence		.											.	.	.	.	.	.	.																	.	.	.	.	.					.	.	.	.	.
Query Sequence		.	I	I	Y	S	S	C	N	A	Q	T	.	.	.	.	.	.	.	M	A	K	D	I	R	E	L	P	G	F	R	I	E	R	V	.	.	.	.	.	Q	L	F	D	.	.	.	.	.	M	F	P	H	T	A	H	Y	E	V	L	T	L	L	V	K
Query Conservation		.											.	.	.	.	.	.	.																	.	.	.	.	.					.	.	.	.	.
Alig confidence		.											.	.	.	.	.	.	.																	.	.	.	.	.					.	.	.	.	.
Template Conservation
Template Sequence		I	L	V	T	C	S	C	S	Q	H	V	D	L	Q	X	F	K	D	X	I	I	A	A	G	A	K	A	G	K	F	L	K	X	L	E	P	Y	R	T	Q	A	P	D	H	P	I	L	X	A	S	K	D	T	E	Y	L	K	C	L	F	L	Y	V	E
Template Known Secondary structure										T	T	S																T	T						S	S			B		S		T	T	S				T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions