Job Description P75817 Confidence 100.00% Date Thu Jan 5 12:14:29 GMT 2012 Rank 2 Aligned Residues 344 % Identity 24% Template c1uwvA_ PDB info PDB header:transferase Chain: A: PDB Molecule:23s rrna (uracil-5-)-methyltransferase ruma; PDBTitle: crystal structure of ruma, the iron-sulfur cluster2 containing e. coli 23s ribosomal rna 5-methyluridine3 methyltransferase Resolution 1.95 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.			.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.
Query SS confidence																																																																				.	.
Query Sequence		Q	C	A	L	Y	D	A	G	R	C	R	S	C	Q	W	I	M	Q	P	I	P	E	Q	L	S	A	K	T	A	D	L	K	N	L	L	A	D	F	P	V	E	E	W	C	A	P	V	S	G	P	E	Q	G	F	R	N	K	A	K	M	V	V	S	G	S	V	.	.	E	K	P	L	L	G	M	L	H	R	D	G
Query Conservation																																																																				.	.
Alig confidence							.	.																													.	.	.	.																												.	.
Template Conservation							.	.																													.	.	.	.
Template Sequence		R	C	P	H	F	.	.	G	V	C	G	G	C	Q	Q	Q	H	A	S	V	D	L	Q	Q	R	S	K	S	A	A	L	A	R	L	X	.	.	.	.	K	H	D	V	S	E	V	I	A	D	V	P	W	G	Y	R	R	R	A	R	L	S	L	N	Y	L	P	K	T	Q	Q	L	Q	X	G	F	R	K	A	G	S
Template Known Secondary structure		S		T	T	T	.	.	T	T	B	T	T		S		T	T	B																		.	.	.	.	T	S										S	S	S		B	S										T	T	T	T								B	T	T	S
Template Predicted Secondary structure							.	.																													.	.	.	.
Template SS confidence
		80	.	.	.	.			.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.					.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		80		.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		T	.	P	E	D	L	C	D	C	P	L	Y	P	A	S	F	A	P	V	F	A	A	L	K	P	F	I	A	R	A	G	L	T	P	Y	N	V	A	R	K	R	G	E	L	K	Y	I	L	L	T	E	S	Q	S	D	G	G	M	M	L	R	F	V	L	R	S	D	T	K	L	A	Q	L	R	K	A	L	P	W	L
Query Conservation			.
Alig confidence			.																																			.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.
Template Sequence		S	D	I	V	D	V	K	Q	C	P	I	L	A	P	Q	L	E	A	L	L	P	K	V	R	A	C	L	G	S	L	Q	A	X	R	H	L	.	.	.	.	.	.	.	.	.	.	G	H	V	E	L	V	Q	A	T	S	G	T	L	X	I	L	R	H	T	A	P	L	S	S	A	D	R	E	K	L	E	R	F	S
Template Known Secondary structure		S						S			T	T	B																T	T		G	G	G	G	G		.	.	.	.	.	.	.	.	.	.									T	T									S	S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.											190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	E	Q	L	P	Q	L	K	V	I	T	V	N	I	Q	P	V	H	M	A	I	M	E	G	E	T	E	I	Y	L	T	E	Q	Q	A	L	A	E	R	F	N	D	V	P	L	W	I	R	P	Q	S	F	F	Q	T	N	P	A	V	A	S	Q	L	Y	A	T	A	R	D	W	V	R	Q	L	P	V	K	H	M	W
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.																								.
Template Sequence		H	S	E	G	.	.	.	.	.	.	.	.	.	.	.	L	D	L	Y	L	A	P	D	S	E	I	L	E	T	V	S	G	E	X	P	W	Y	D	.	S	N	G	L	R	L	T	F	S	P	R	D	F	I	Q	V	N	A	G	V	N	Q	K	X	V	A	R	A	L	E	W	L	D	V	Q	P	E	D	R	V	L
Template Known Secondary structure					T	.	.	.	.	.	.	.	.	.	.	.							S	S	S	S														.		T	T							S	S	S				S	B																T			T	T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.																								.
Template SS confidence
		224	.	.	.												.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.				.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.
Query SS confidence																																																													.	.	.
Query Sequence		D	L	F	C	G	V	G	G	F	G	L	H	C	A	T	P	D	M	Q	L	T	G	I	E	I	A	S	E	A	I	A	C	A	K	Q	S	A	A	E	L	G	L	T	R	L	Q	F	Q	A	L	D	S	T	Q	F	A	T	A	Q	.	.	.	G	D	V	P	E	L	V	L	V	N	P	P	R	R	G	I	G	K
Query Conservation																																																													.	.	.
Alig confidence																																																													.	.	.
Template Conservation
Template Sequence		D	L	F	C	G	X	G	N	F	T	L	P	L	A	T	Q	A	A	S	V	V	G	V	E	G	V	P	A	L	V	E	K	G	Q	Q	N	A	R	L	N	G	L	Q	N	V	T	F	Y	H	E	N	L	E	E	D	V	T	K	Q	P	W	A	K	N	G	F	D	K	V	L	L	D	P	A	R	A	G	A	A	G
Template Known Secondary structure				S		T	T	T	T	T						T	T	S	S							S															T	T			S								T	T	S			S	S	S	G	G	G	T	T			S								T	T
Template Predicted Secondary structure
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.			.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		P	L	C	D	Y	L	S	T	M	A	P	R	F	I	I	Y	S	S	C	N	A	Q	T	M	A	K	D	I	R	E	L	.	.	P	G	F	R	I	E	R	V	Q	L	F	D	M	F	P	H	T	A	H	Y	E	V	L	T	L	L	V	K
Query Conservation																																	.	.
Alig confidence		.																															.	.
Template Conservation		.
Template Sequence		.	V	X	Q	Q	I	I	K	L	E	P	I	R	I	V	Y	V	S	C	N	P	A	T	L	A	R	D	S	E	A	L	L	K	A	G	Y	T	I	A	R	L	A	X	L	D	X	F	P	H	T	G	H	L	E	S	X	V	L	F	S	R
Template Known Secondary structure		.											S							S															T	T												S	T	T	S	S
Template Predicted Secondary structure		.
Template SS confidence
			372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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