Job Description P75817 Confidence 49.13% Date Thu Jan 5 12:14:29 GMT 2012 Rank 449 Aligned Residues 86 % Identity 12% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.				.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.		.	.	.	.	.	.	.	.	290	.	.	.	.	.	.						.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.
Predicted Secondary structure																				.	.	.																		.																.	.	.	.	.												.						.	.	.	.
Query SS confidence																				.	.	.																		.																.	.	.	.	.												.						.	.	.	.
Query Sequence		F	G	L	H	C	A	T	P	D	M	Q	L	T	G	I	E	I	A	.	.	.	S	E	A	I	A	C	A	K	Q	S	A	A	E	L	G	L	T	.	R	L	Q	F	Q	A	L	D	S	T	Q	F	A	T	A	.	.	.	.	.	Q	G	D	V	P	E	L	V	L	V	N	.	P	P	R	R	G	.	.	.	.
Query Conservation																				.	.	.																		.																.	.	.	.	.												.						.	.	.	.
Alig confidence																				.	.	.																		.																.	.	.	.	.												.						.	.	.	.
Template Conservation
Template Sequence		L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V	D	I	F	V	K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E
Template Known Secondary structure								T	T	S					B						S	S	S		S											T	T							S	S				T	T													T	T		S									S			S	S	T
Template Predicted Secondary structure
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
				313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	I	G	K	P	L	C	D	Y	L	S	T	M	A	P	R	F	I	I	Y	S
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		T	K	L	L	E	E	M	K	E	M	Y	D	V	L	K	P	D	D	V	I	L	V
Template Known Secondary structure																		S
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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