 |
Job Description | P75817 | Confidence | 86.95% | Date | Thu Jan 5 12:14:29 GMT 2012 |
Rank | 345 | Aligned Residues | 111 |
% Identity | 14% | Template | c1pgjA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:6-phosphogluconate dehydrogenase; |
PDBTitle: x-ray structure of 6-phosphogluconate dehydrogenase from the protozoan2 parasite t. brucei
|
Resolution | 2.82 Å |
|
 |
  |   |
243 | . | . | . | . | . | . | 250 | . | . | |
|
|
|
. | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  | . | . | . | . |  |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | V | G | G | F | G | L | H | C | A | . |
. |
. |
. |
T | P | D | M | Q | L | T | G | I | E | I | A | S | E | A | I | A | C | A | K | Q | S | A | A | E | L | G | L | T | R | L | Q | F | Q | A | L | D | S | T | Q | F | A | T | A | Q | G | D | V | P | E | L | V | L | V | N | P | P | R | R | G | I | G | K | P | L | C |
Query Conservation |   |
|   |
|   |   |   |   |   |
|
| . | . | . | . |   |   |   |   |   |
|   |
|
|
|   |   |   |   |
|
|   |   |
|   |   |
|   |   |   |   |   |
|   |
|
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |
|
|
|
|   |
|   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |
|
|   |   |
|
|   |
|
|   |   |   |
|   |   |
|   |
|
|
|
|   |   |   |   |   |
|   |
|   |   |   |
|
|   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|
| . |
|   |   |
|   |   |
|   |
|
|
|
|   |
|   |
|
|   |   |
|   |   |
|
|
Template Sequence |   |
G | L | G | V | M | G | A | N | L | A | L | N | I | A | E | K | G | F | K | V | A | V | F | N | R | T | Y | S | K | S | E | E | F | M | K | A | N | A | S | A | P | F | A | G | N | L | K | A | F | E | T | M | E | A | F | . |
A | A | S | L | K | K | P | R | K | A | L | I | L | V | Q | A | G | A | A | T | D | S | T | I |
Template Known Secondary structure |   |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |
| S | S |  |  |  |  |  |  |  |  |  |  | T | T | T | S | T | T | G | G | G |  |  |  |
| S |
|  |  |  |  | . |  |  |  | B |
| S | S |
|  |  |  |  |
|
|
|
| S |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  | . |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
8 | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | |
. | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . |
  |
  |   |
319 | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | |
|
|
. | . | . | . | . | 340 | . | . | . | . | . | . | |
|
. | . | . | 350 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
| . | . | . |
|  |  |  |  |  |  |  |  |  |  |  | . | . |
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
Query Sequence |   |
D | Y | L | S | T | M | A | P | R | F | I | I | Y | S | S | C | . |
. |
. |
N | A | Q | T | M | A | K | D | I | R | E | L | . |
. |
P | G | F | R | I | E | R | V |
Query Conservation |   |
  |   |
|   |   |   |   |   |   |   |
|
|
|
|
|
| . | . | . |   |
|   |
|
|   |
|
|
|   |   |
| . | . |   |
|
|   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |
|   |   |
|   |
|
|
|
|   |
|
|
|   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |
|
|   |
|
|
|
|
Template Sequence |   |
E | Q | L | K | K | V | F | E | K | G | D | I | L | V | D | T | G | N | A | H | F | K | D | Q | G | R | R | A | Q | Q | L | E | A | A | G | L | R | F | L | G | M |
Template Known Secondary structure |   |
 |  |  |  |  |  |
|
| T | T |
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
87 | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|