Job Description P37636 Confidence 100.00% Date Thu Jan 5 11:56:08 GMT 2012 Rank 1 Aligned Residues 294 % Identity 20% Template c3h9iB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:cation efflux system protein cusb; PDBTitle: crystal structure of the membrane fusion protein cusb from escherichia2 coli Resolution 3.40 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.																				.
Query SS confidence																													.	.																				.
Query Sequence		A	M	T	P	E	V	G	V	V	T	L	S	P	G	S	V	N	V	L	S	E	L	P	G	R	T	V	.	.	P	Y	E	V	A	E	I	R	P	Q	V	G	G	I	I	I	K	R	N	.	F	I	E	G	D	K	V	N	Q	G	D	S	L	Y	Q	I	D	P	A	P	L	Q	A	E	L	N	S	A	K	G	S
Query Conservation																													.	.																				.
Alig confidence																													.	.																				.																			.	.	.	.
Template Conservation																																																																					.	.	.	.
Template Sequence		T	Q	N	L	G	V	K	T	A	T	V	T	R	G	P	L	T	F	A	Q	S	F	P	A	N	V	S	Y	N	E	Y	Q	Y	A	I	V	Q	A	R	A	A	G	F	I	D	K	V	Y	P	L	T	V	G	D	K	V	Q	K	G	T	P	L	L	D	L	T	I	.	.	.	.	P	D	W	V	E	A	Q	S	E
Template Known Secondary structure													B																B		T	T									S									S			S	S					T	T									.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.					.	.	.	.	160	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	K	A	L	S	T	A	S	N	A	R	I	T	F	N	R	Q	A	S	L	L	K	T	N	Y	V	S	R	Q	D	Y	D	T	A	R	T	Q	L	N	E	A	E	A	N	V	T	V	A	K	A	A	V	E	Q	A	T	I	N	L	Q	Y	A	N	V	T	S	P	I	T	G	V	S	G	K	S	S	V	T	V
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	L	L	L	R	E	T	G	G	T	A	T	Q	T	E	G	I	L	E	R	L	R	L	A	G	M	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	I	R	R	L	I	A	T	Q	K	I	Q	T	R	F	T	L	K	A	P	I	D	G	V	I	T	A	F	D	L	R	A
Template Known Secondary structure								S																		T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					S	S					S						S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.																				.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	L	V	T	A	N	Q	A	D	S	L	V	T	V	Q	R	L	D	P	I	Y	V	D	L	T	Q	S	V	Q	D	F	L	R	M	K	E	E	V	A	S	G	Q	I	K	Q	V	Q	G	S	T	P	V	Q	L	N	L	E	N	G	K	R	Y	S	Q	T	G	T	L	K	F	S	D	P	T	V	D	E	T	T
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	M	N	I	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	V	V	A	K	I	Q	G	M	D	P	V	W	V	T	A	A	I	P	E	S	I	A	W	L	V	K	D	A	S	Q	F	T	L	T	V	P	A	R	P	D	K	T	L	T	I	R	K	W	T	L	L	P	G	V	D	A	A	T
Template Known Secondary structure		S					S	.	.	.	.	.	.	.	.	.	.	.	.	.	.											S																			G	G	G						S	S				S															T	T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		226	.	.	.	230	.															.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	V	T	L	R	A	I	F	P	N	P	N	G	D	L	L	P	G	M	Y	V	T	A	L	V	D	E	G	S	R	Q	N	V	L	L	V	P	Q	E	G	V	T	H	N	A	Q	G	K	A	T	A	L	I	L	D	K	D	D	V	V	Q	L	R	E	I	E	A	S	K	A	I	G	D	Q	W	V	V	T	S
Query Conservation
Alig confidence																															.														.
Template Conservation																															.														.
Template Sequence		R	T	L	Q	L	R	L	E	V	D	N	A	D	E	A	L	K	P	G	M	N	A	W	L	Q	L	N	T	A	.	S	E	P	M	L	L	I	P	S	Q	A	L	I	.	D	T	G	S	E	Q	R	V	I	T	V	D	A	D	G	R	F	V	P	K	R	V	A	V	F	Q	A	S	Q	G	V	T	A	L	R	S
Template Known Secondary structure		T												S	S				T	T											.		S							G	G	G		B	.		S	S	S									S	S	S														T	T
Template Predicted Secondary structure																															.														.
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	Q	A	G	D	R	V	I	V	S	G	L	Q	R	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	A	E	G	E	K	V	V	S	S	G	L	F	L	I
Template Known Secondary structure		S			T	T					S	S
Template Predicted Secondary structure
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions