Return to main results Retrieve Phyre Job Id

Job DescriptionQ46866
Confidence99.92%DateThu Jan 5 12:35:25 GMT 2012
Rank7Aligned Residues138
% Identity15%Templatec3gk6A_
PDB info PDB header:structural genomics, unknown functionChain: A: PDB Molecule:integron cassette protein vch_cass2; PDBTitle: crystal structure from the mobile metagenome of vibrio cholerae.2 integron cassette protein vch_cass2.
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20...... ...30.........40.........50.........60.........70.......
Predicted Secondary structure 


........




















Query SS confidence 




















. . . . . . . .


















































Query Sequence  LDVNIIDFPSIPVAMLPHRCS. . . . . . . . PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGS
Query Conservation 
 
 
  

   
   
  
 ........   
               
         
                     
Alig confidence 




















........


















...









.

















Template Conservation      

   

 



  
     
       

  
           ...       

 .            
 

 
Template Sequence  QGXNISEINGFEVTGFVVRTTNADEXNPXTAKIGNLWEKFYLNAAPKL. . . TDKSKVYGLY. TNYESDFTGAFDVIACSD
Template Known Secondary structure 


STTT

TGGG
...
TT

.

SSSTTS
S
Template Predicted Secondary structure 















...




.








Template SS confidence 















































































  
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions