Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0AAA5
DateThu Jan 5 11:12:21 GMT 2012
Unique Job IDc38a44fead72083c

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2z1dA_
Top template information
PDB header:metal binding protein
Chain: A: PDB Molecule:hydrogenase expression/formation protein hypd;
PDBTitle: crystal structure of [nife] hydrogenase maturation protein, hypd from2 thermococcus kodakaraensis
Confidence and coverage
Confidence: 11.9% Coverage: 26%
20 residues ( 26% of your sequence) have been modelled with 11.9% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MRRWISQNNIRLPRGAFFISALFFFNAVCIVSDNLLIIESFGEMAYNISYLTRVPGTNTL
Secondary structure 






















SS confidence 



























































Disorder  ??????





















































Disorder confidence 



























































 
   .........70......
Sequence  LACCCLLRPEEVNSEY
Secondary structure 





SS confidence 















Disorder 










?????
Disorder confidence 















 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2z1d chain A

3D model

Region: 36 - 62
Aligned: 20
Modelled: 27
Confidence: 11.9%
Identity: 30%
PDB header:metal binding protein
Chain: A: PDB Molecule:hydrogenase expression/formation protein hypd;
PDBTitle: crystal structure of [nife] hydrogenase maturation protein, hypd from2 thermococcus kodakaraensis

Phyre2

PDB 1fjr chain A

3D model

Region: 36 - 69
Aligned: 34
Modelled: 34
Confidence: 8.0%
Identity: 24%
Fold: Methuselah ectodomain
Superfamily: Methuselah ectodomain
Family: Methuselah ectodomain

Phyre2

PDB 1icl chain A

3D model

Region: 46 - 60
Aligned: 15
Modelled: 15
Confidence: 6.0%
Identity: 47%
PDB header:de novo protein
Chain: A: PDB Molecule:th1ox;
PDBTitle: solution structure of designed beta-sheet mini-protein th1ox

Phyre2

PDB 3arc chain T

3D model

Region: 19 - 25
Aligned: 7
Modelled: 7
Confidence: 5.0%
Identity: 86%
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution

Phyre2

PDB 2axt chain T

3D model

Region: 19 - 25
Aligned: 7
Modelled: 7
Confidence: 5.0%
Identity: 86%
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center t protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus

Phyre2

PDB 2axt chain T

3D model

Region: 19 - 25
Aligned: 7
Modelled: 7
Confidence: 5.0%
Identity: 86%
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center t protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus

Phyre2

PDB 3a0b chain T

3D model

Region: 19 - 25
Aligned: 7
Modelled: 7
Confidence: 5.0%
Identity: 86%
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of br-substituted photosystem ii complex

Phyre2

PDB 2axt chain T domain 1

3D model

Region: 19 - 25
Aligned: 7
Modelled: 7
Confidence: 5.0%
Identity: 86%
Fold: Single transmembrane helix
Superfamily: Photosystem II reaction center protein T, PsbT
Family: PsbT-like

Phyre2

PDB 3a0h chain T

3D model

Region: 19 - 25
Aligned: 7
Modelled: 7
Confidence: 5.0%
Identity: 86%
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of i-substituted photosystem ii complex

Phyre2

PDB 3kzi chain T

3D model

Region: 19 - 25
Aligned: 7
Modelled: 7
Confidence: 5.0%
Identity: 86%
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii

Phyre2
1

c2z1dA_
2

d1fjra_
3

c1iclA_
4

c3arcT_
5

c2axtt_
6

c2axtT_
7

c3a0bt_
8

d2axtt1
9

c3a0hT_
10

c3kziT_



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2z1dA_



11.9 30 PDB header:metal binding protein
Chain: A: PDB Molecule:hydrogenase expression/formation protein hypd;
PDBTitle: crystal structure of [nife] hydrogenase maturation protein, hypd from2 thermococcus kodakaraensis
2d1fjra_



8.0 24 Fold:Methuselah ectodomain
Superfamily:Methuselah ectodomain
Family:Methuselah ectodomain
3c1iclA_



6.0 47 PDB header:de novo protein
Chain: A: PDB Molecule:th1ox;
PDBTitle: solution structure of designed beta-sheet mini-protein th1ox
4c3arcT_



5.0 86 PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
5c2axtt_



5.0 86 PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center t protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
6c2axtT_



5.0 86 PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center t protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
7c3a0bt_



5.0 86 PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of br-substituted photosystem ii complex
8d2axtt1



5.0 86 Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein T, PsbT
Family:PsbT-like
9c3a0hT_



5.0 86 PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of i-substituted photosystem ii complex
10c3kziT_



5.0 86 PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0