|   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | R | L | L | H | T | M | L | R | V | G | D | L | Q | R | S | I | D | F | Y | T | K | V | L | G | M | K | L | L | R | T | S | E | N | P | E | Y | K | Y | S | L | A | F | V | G | Y | G | P | E | T | E | E | A | V | I | E | L | T | Y | N | W | G | V | D | K | Y | E | L | G | T | A | Y | G | H | I | A | L | S | V | D |
Query Conservation |   |
|
|
|   |
|
|   |
|   |
|   |
|
|   |   |
|   |   |
|
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|
|   |
|   |
|   |
|
|
|
|
|   |   |
|
|   |   | . |
|
|
|   |
|   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |
|
|   |   | . | . | . | . | . | . |   |   |   |   |   |
|
|
|
|
|
|
|   |
|   |   |   |   |
Template Sequence |   |
V | R | L | D | H | F | N | Q | V | T | P | D | V | P | R | G | R | K | Y | L | E | D | . |
L | G | F | R | V | T | E | D | I | Q | D | D | E | G | T | T | Y | A | A | W | M | H | R | K | G | T | V | H | D | T | A | L | T | . |
. |
. |
. |
. |
. |
G | G | N | G | P | R | L | H | H | V | A | F | S | T | H | E | K | H |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  | S |
|  |  |  |  |  |  |  |  |  |  | . | T | T |
|  |  |  |  |  |  |  |
| T | T | S |
|  |  |  |  |  |  |  | S | S | S | S | S |
| S |  |  |  |  | . | . | . | . | . | . |  | S | S | B | S |  |  |  |  |  |  |  |  |
| S | S |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  | . |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  | . | . | . | . | . | . |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
151 | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | |
. | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | |
|
|
|
|
|
. | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . |
  |
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | |
|
. | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . |
|
|
|
|
|  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | A | A | E | A | C | E | K | I | R | Q | N | G | G | N | . |
. |
V | T | R | E | A | G | P | V | K | G | G | T | T | V | I | A | F | V | E | D | P | D | G | Y | K | I | E | L | I | E | E |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |
|   |   | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|   |
|
|
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |   |   |
|   |
|   |
|   |
|   |   |   |   |
|
|   |
|
|
|
|
|
|   |   |   |   |   |   |   |
|
|
|
|
|
|
|
|   |
|
|
|
|
|   |
Template Sequence |   |
N | I | I | Q | I | C | D | K | M | G | A | L | R | I | S | D | R | I | E | R | G | P | G | R | H | G | V | S | N | A | F | Y | L | Y | I | L | D | P | D | N | H | R | I | E | I | Y | T | Q |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  | T | T |
| G | G | G |  |  |  |  |  |  |  |
| S | T | T |
|
|  |  |  |  |  |  |
| T | T |
|
|  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
224 | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . |
  |