Job Description Q46855 Confidence 100.00% Date Thu Jan 5 12:35:15 GMT 2012 Rank 1 Aligned Residues 237 % Identity 11% Template c3gbgA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:tcp pilus virulence regulatory protein; PDBTitle: crystal structure of toxt from vibrio cholerae o395 Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.			.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		P	V	M	Y	E	P	G	I	I	I	L	F	S	G	H	K	I	G	Y	I	N	E	.	.	R	V	F	R	Y	D	A	N	E	Y	L	L	L	T	V	P	L	P	F	E	C	E	T	Y	A	T	S	E	V	P	L	A	G	L	R	L	N	V	D	I	L	Q	L	Q	E	L	L	M	D	I	G	E	D	E	H	F
Query Conservation																								.	.
Alig confidence																								.	.																																																		.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		L	Y	I	N	D	Y	K	M	F	W	I	D	S	G	I	A	K	L	I	D	K	N	C	L	V	S	Y	E	I	N	S	S	S	I	I	L	L	K	K	N	S	I	Q	R	F	S	L	T	S	L	S	D	E	N	I	N	V	S	V	I	T	I	S	D	S	F	I	R	S	L	K	S	Y	.	.	.	.	.	.	.
Template Known Secondary structure					S	S							S	S	S							T	T	T	T							T	T							T	T												S	S																					.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	S	M	A	A	S	G	I	N	S	A	T	L	S	E	E	I	L	C	A	A	E	R	L	L	D	V	M	E	R	P	L	D	A	R	I	L	G	K	Q	I	I	R	E	I	L	Y	Y	V	L	T	G	P	C	G	G	A	L	L	A	L	V	S	R	Q	T	H	F	S	L	I	S	R	V	L	K	R	I	E
Query Conservation
Alig confidence		.	.																																																							.	.	.	.	.	.
Template Conservation		.	.																																																							.	.	.	.	.	.
Template Sequence		.	.	I	L	G	N	K	D	L	L	L	W	N	C	E	H	N	D	I	A	V	L	S	E	V	V	N	G	F	R	E	I	N	Y	S	D	E	F	L	K	V	F	F	S	G	F	F	S	K	V	E	K	K	Y	N	S	.	.	.	.	.	.	I	F	I	T	D	D	L	D	A	M	E	K	I	S	C	L	V	K
Template Known Secondary structure		.	.														S	S										T	T	T	S	S																				T	T	T	S	S	S	.	.	.	.	.	.		S	S			T	T
Template Predicted Secondary structure		.	.																																																							.	.	.	.	.	.
Template SS confidence
				98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.							.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	Y	T	E	N	L	S	V	E	Q	L	A	A	E	A	N	M	S	V	S	A	F	H	H	N	F	K	S	V	T	S	T	S	P	L	Q	Y	L	K	N	Y	R	L	H	K	A	R	M	M	I	I	H	D	G	M	K	A	S	A	A	A	M	R	V	G	Y	E	S	A	S	Q	F	S	R	E	F	K	R	Y
Query Conservation
Alig confidence																															.
Template Conservation																															.
Template Sequence		S	D	I	T	R	N	W	R	W	A	D	I	C	G	E	L	R	T	N	R	M	I	L	K	K	E	L	E	S	.	R	G	V	K	F	R	E	L	I	N	S	I	R	I	S	Y	S	I	S	L	M	K	T	G	E	F	K	I	K	Q	I	A	Y	Q	S	G	F	A	S	V	S	Y	F	S	T	V	F	K	S	T
Template Known Secondary structure			T	T	T	S												T												T	.	T	T																						T											T	T		S
Template Predicted Secondary structure																															.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	V	T	P	G	E	D	A	A	R	M	R	A	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	N	V	A	P	S	E	Y	L	F	M	L	T	G	V
Template Known Secondary structure			S	S									T	S
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions