Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP75769
DateThu Jan 5 12:13:57 GMT 2012
Unique Job IDc27f16a0bc17fce5

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2h3oA_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:merf;
PDBTitle: structure of merft, a membrane protein with two trans-2 membrane helices
Confidence and coverage
Confidence: 15.0% Coverage: 7%
16 residues ( 7% of your sequence) have been modelled with 15.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MESYSQNSNKLDFQHEARILNGIWLITALGLVATAGLAWGAKYIEITATKYDSPPMYVAI
Secondary structure 






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   .........70.........80.........90.........100.........110.........120
Sequence  GLLLLCMYGLSKDINKINAAIAGVIYLFLLSLVAIVVASLVPVYAIIIVFSTAGAMFLIS
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   .........130.........140.........150.........160.........170.........180
Sequence  MLAGLLFNVDPGSHRFIIMMTLTGLALVIIVNAALMSERPIWIISCLMIVLWSGIISHGR
Secondary structure 





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   .........190.........200.........210.........220.........230.......
Sequence  NKLLELAGKCHSEELWSPVRCAFTGALTLYYYFIGFFGILAAIAITLVWQRHTRFFH
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2h3o chain A

3D model

Region: 115 - 130
Aligned: 16
Modelled: 16
Confidence: 15.0%
Identity: 13%
PDB header:membrane protein
Chain: A: PDB Molecule:merf;
PDBTitle: structure of merft, a membrane protein with two trans-2 membrane helices

Phyre2

PDB 1waz chain A

3D model

Region: 113 - 130
Aligned: 18
Modelled: 18
Confidence: 13.6%
Identity: 17%
PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: nmr structure determination of the bacterial mercury2 transporter, merf, in micelles

Phyre2

PDB 2bbj chain B

3D model

Region: 2 - 76
Aligned: 70
Modelled: 75
Confidence: 10.9%
Identity: 7%
PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter

Phyre2

PDB 2r6g chain F domain 1

3D model

Region: 115 - 205
Aligned: 91
Modelled: 91
Confidence: 7.2%
Identity: 8%
Fold: MalF N-terminal region-like
Superfamily: MalF N-terminal region-like
Family: MalF N-terminal region-like

Phyre2

PDB 3fbl chain A

3D model

Region: 172 - 210
Aligned: 39
Modelled: 39
Confidence: 6.1%
Identity: 13%
PDB header:structural protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of orf132 of the archaeal virus acidianus2 filamentous virus 1 (afv1)

Phyre2
1

c2h3oA_
2

c1wazA_
3

c2bbjB_
4

d2r6gf1
5

c3fblA_



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2h3oA_



15.0 13 PDB header:membrane protein
Chain: A: PDB Molecule:merf;
PDBTitle: structure of merft, a membrane protein with two trans-2 membrane helices
2c1wazA_



13.6 17 PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: nmr structure determination of the bacterial mercury2 transporter, merf, in micelles
3c2bbjB_



10.9 7 PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter
4d2r6gf1



7.2 8 Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
5c3fblA_



6.1 13 PDB header:structural protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of orf132 of the archaeal virus acidianus2 filamentous virus 1 (afv1)

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0