Secondary structure and disorder prediction |   |
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1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 |
Sequence |   |
M | E | S | Y | S | Q | N | S | N | K | L | D | F | Q | H | E | A | R | I | L | N | G | I | W | L | I | T | A | L | G | L | V | A | T | A | G | L | A | W | G | A | K | Y | I | E | I | T | A | T | K | Y | D | S | P | P | M | Y | V | A | I |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |
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Disorder confidence |   |
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. | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 |
Sequence |   |
G | L | L | L | L | C | M | Y | G | L | S | K | D | I | N | K | I | N | A | A | I | A | G | V | I | Y | L | F | L | L | S | L | V | A | I | V | V | A | S | L | V | P | V | Y | A | I | I | I | V | F | S | T | A | G | A | M | F | L | I | S |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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| ? | ? | ? | ? | ? | ? |
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Disorder confidence |   |
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. | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 |
Sequence |   |
M | L | A | G | L | L | F | N | V | D | P | G | S | H | R | F | I | I | M | M | T | L | T | G | L | A | L | V | I | I | V | N | A | A | L | M | S | E | R | P | I | W | I | I | S | C | L | M | I | V | L | W | S | G | I | I | S | H | G | R |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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  |   |
. | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . |
Sequence |   |
N | K | L | L | E | L | A | G | K | C | H | S | E | E | L | W | S | P | V | R | C | A | F | T | G | A | L | T | L | Y | Y | Y | F | I | G | F | F | G | I | L | A | A | I | A | I | T | L | V | W | Q | R | H | T | R | F | F | H |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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  |
Confidence Key |
High(9) |   |
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Low (0) |
? | Disordered |
  | Alpha helix |
  | Beta strand |
Hover over an aligned region to see model and summary info
Please note, only up to the top 20 hits are modelled to reduce computer load
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1 |
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PDB 2h3o chain A
Region: 115 - 130 Aligned: 16 Modelled: 16 Confidence: 15.0% Identity: 13% PDB header:membrane protein Chain: A: PDB Molecule:merf;
PDBTitle: structure of merft, a membrane protein with two trans-2 membrane helices
Phyre2
2 |
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PDB 1waz chain A
Region: 113 - 130 Aligned: 18 Modelled: 18 Confidence: 13.6% Identity: 17% PDB header:transport protein Chain: A: PDB Molecule:merf;
PDBTitle: nmr structure determination of the bacterial mercury2 transporter, merf, in micelles
Phyre2
3 |
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PDB 2bbj chain B
Region: 2 - 76 Aligned: 70 Modelled: 75 Confidence: 10.9% Identity: 7% PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter
Phyre2
4 |
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PDB 2r6g chain F domain 1
Region: 115 - 205 Aligned: 91 Modelled: 91 Confidence: 7.2% Identity: 8% Fold: MalF N-terminal region-like Superfamily: MalF N-terminal region-like Family: MalF N-terminal region-like
Phyre2
5 |
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PDB 3fbl chain A
Region: 172 - 210 Aligned: 39 Modelled: 39 Confidence: 6.1% Identity: 13% PDB header:structural protein Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of orf132 of the archaeal virus acidianus2 filamentous virus 1 (afv1)
Phyre2
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Detailed template information |   |
Binding site prediction |   |
Due to computational demand, binding site predictions are not run for batch jobs
If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
If you use the binding site
predictions from 3DLigandSite, please also cite: |
3DLigandSite: predicting ligand-binding sites using similar structures. |
Wass MN, Kelley LA and Sternberg
MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed] |
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