Phyre 2 alignment of P0A6L4 with d2e7ja1

Job Description P0A6L4
Confidence 51.65% Date Thu Jan 5 11:03:26 GMT 2012

Rank 396 Aligned Residues 251

% Identity 12% Template d2e7ja1

SCOP info PLP-dependent transferase-like PLP-dependent transferases SepSecS-like

Resolution 2.40

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	S	L	R	R	L	V	Q	F	N	I	Q	Q	G	I	D	G	L	Y	V	G	G	S	T	G	E	A	F	V	Q	S	L	S	E	R	E	Q	V	L	E	I	V	A	E	E	A	K	G	K	I	K	L	I	A	H	V	G	C	V	S	T	A	E	S	Q	Q	L	A	A	S	A	K	R	Y	G	F	D	A	V	S
Query Conservation
Alig confidence												.	.																		.	.	.	.	.	.	.								.	.																						.	.	.	.	.	.
Template Conservation												.	.																		.	.	.	.	.	.	.								.	.																						.	.	.	.	.	.
Template Sequence	D	F	I	H	N	Q	L	P	K	F	L	.	.	G	C	D	V	A	R	V	T	N	G	A	R	E	A	K	F	A	.	.	.	.	.	.	.	V	M	H	S	L	A	K	.	.	K	D	A	W	V	V	M	D	E	N	C	H	Y	S	S	Y	V	A	A	E	R	.	.	.	.	.	.	A	G	L	N	I	A	L
Template Known Secondary structure					T						T	.	.	T	S	S						S	S								.	.	.	.	.	.	.								.	.	T	T							T	T												.	.	.	.	.	.	T	T
Template Predicted Secondary structure												.	.																		.	.	.	.	.	.	.								.	.																						.	.	.	.	.	.
Template SS confidence
	57	.	.	60	.	.	.	.	.	.	.			.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.								.	.	.	.	.	90	.			.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.							.	.	.	.	.	.	.

	105	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure				.	.																																																		.
Query SS confidence				.	.																																																		.
Query Sequence	A	V	T	.	.	P	F	Y	Y	P	F	S	F	E	E	H	C	D	H	Y	R	A	I	I	D	S	A	D	G	L	P	M	V	V	Y	N	I	P	A	L	S	G	V	K	L	T	L	D	Q	I	N	T	L	V	.	T	L	P	G	V	G	A	L	K	Q	T	S	G	D	L	Y	Q	M	E	Q	I	R	R	E	H
Query Conservation				.	.																																																		.
Alig confidence				.	.																																																		.
Template Conservation
Template Sequence	V	P	K	T	D	Y	P	D	Y	A	I	T	P	E	N	F	A	Q	T	I	E	E	T	K	K	R	G	E	V	V	L	A	L	I	T	Y	P	D	G	N	Y	G	N	L	P	D	V	K	K	I	A	K	V	C	S	E	Y	D	V	P	L	L	V	N	G	A	Y	A	I	G	R	M	P	V	S	L	K	E	I	G
Template Known Secondary structure						T	T	T																T	T	T	S									S	S		T	T	T															T	T	T								T	T	T	B	T	T	B								T
Template Predicted Secondary structure
Template SS confidence
	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.

	182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.																										.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	P	D	L	V	L	Y	N	G	Y	D	E	I	F	A	S	G	L	L	A	G	A	D	G	G	I	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Y	N	I	M	G	W	R	Y	Q	G	I	V	K	A	L	K	E	G	D	I	Q	T	A	Q	K	L	Q
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.
Template Sequence	A	D	F	I	V	G	S	G	H	K	.	.	.	.	S	M	A	A	S	G	P	I	G	V	M	G	M	K	E	E	W	A	E	I	V	L	R	R	S	E	K	Y	K	N	K	E	V	E	L	L	G	C	T	A	R	G	A	T	I	I	T	L	M	A	S	F	P	H	V	R	E	R	I	K	R	W	D	E	E	V
Template Known Secondary structure		S									.	.	.	.		S	S			S	S								T	T	T	T	T	T	T	T		B		S	S		T	T	S	B	G	G	G	T	T					S																	G	G	G
Template Predicted Secondary structure											.	.	.	.
Template SS confidence
	200	.	.	.	.	.	.	.	.	.					210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

	237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.																															.	.	.	.	.	.	260	.	.	.	.	.	.						.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Query Sequence	T	E	C	N	K	V	I	D	L	L	I	K	T	G	V	F	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	K	T	V	L	H	Y	M	D	V	V	S	.	.	.	.	.	V	P	L	C	R	K	P	F	G	P	V	D	E	K	Y
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Template Conservation
Template Sequence	E	K	A	R	R	F	A	A	E	M	E	K	L	G	I	K	Q	L	G	D	N	P	H	N	H	D	L	M	F	F	H	A	E	V	L	Y	E	I	S	K	K	A	K	G	G	R	F	F	L	Y	R	E	L	K	S	R	K	I	H	G	I	K	P	G	L	T	R	Y	F	K	L	S	T	Y	G	L	S	D	E	E
Template Known Secondary structure													T	T					S	S	S	S			S	S																S	S	S	G	G	G									T	T				S		T	T			S							T	T
Template Predicted Secondary structure
Template SS confidence
	276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.

	282	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	P	E	L	K	A	L	A	Q	Q	L	M	Q	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence	V	D	Y	V	L	N	A	F	K	E	I	I	E	K	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	356	.	.	.	360	.	.	.	.	.	.	.	.	.	370

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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