Job Description P0A6L4 Confidence 96.56% Date Thu Jan 5 11:03:26 GMT 2012 Rank 61 Aligned Residues 195 % Identity 21% Template c3thaB_ PDB info PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: tryptophan synthase subunit alpha from campylobacter jejuni. Resolution 2.37 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.																	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	A	L	D	K	A	S	L	R	R	L	V	Q	F	N	I	Q	Q	G	I	D	G	L	Y	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	T	G	E	A	F	V	Q	S	L	S	E	R	E	Q	V	L	E	I	V	A	E	E	A	K	G	K	I	K	L	I	A	H	V	G	C	V
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Template Conservation																																																																			.	.	.	.
Template Sequence		G	Y	P	N	L	Q	T	S	E	A	F	L	Q	R	L	D	Q	S	P	I	D	I	L	E	L	G	V	A	Y	S	D	P	I	A	D	G	E	I	I	A	D	A	A	K	I	A	L	D	Q	G	V	D	I	H	S	V	F	E	L	L	A	R	I	K	T	.	.	.	.	K	K	A	L	V	F	X	V	Y	Y	N
Template Known Secondary structure		T	S	S											T	G	G	G	S	S		S								S	S					S	S													T	T												T				.	.	.	.	S	S
Template Predicted Secondary structure																																																																			.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.					.	.	.	.	.	90	.	.	.	.	.
		84	.			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160
Predicted Secondary structure				.	.																																																																								.
Query SS confidence				.	.																																																																								.
Query Sequence		S	T	.	.	A	E	S	Q	Q	L	A	A	S	A	K	R	Y	G	F	D	A	V	S	A	V	T	P	F	Y	Y	P	F	S	F	E	E	H	C	D	H	Y	R	A	I	I	D	S	A	D	G	L	P	M	V	V	Y	N	I	P	A	L	S	G	V	K	L	T	L	D	Q	I	N	T	L	V	.	T	L	P	G
Query Conservation				.	.																																																																								.
Alig confidence				.	.																					.	.	.	.	.																			.	.												.	.	.	.	.											.
Template Conservation																										.	.	.	.	.																			.	.												.	.	.	.	.
Template Sequence		L	I	F	S	Y	G	L	E	K	F	V	K	K	A	K	S	L	G	I	C	A	L	I	V	.	.	.	.	.	P	E	L	S	F	E	E	S	D	D	L	I	K	E	C	E	R	Y	.	.	N	I	A	L	I	T	L	V	S	V	T	.	.	.	.	.	T	P	K	E	R	V	K	K	L	V	K	H	A	K	G
Template Known Secondary structure																		T	T							.	.	.	.	.	T	T			G	G	G												.	.	T									T	T	.	.	.	.	.	S										T	T			S
Template Predicted Secondary structure																										.	.	.	.	.																			.	.												.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.						120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.						.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		161	.	.	.	.	.	.	.	.	170												.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190			.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.																					.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.																					.	.
Query Sequence		V	G	A	L	K	Q	T	S	G	D	.	.	.	.	.	.	.	.	.	.	.	L	Y	Q	M	E	Q	I	R	R	E	H	P	D	L	V	L	Y	N	G	Y	.	.	D	E	I	F	A	S	G	L	L	A	G	A	D	G	G	I	G	S	T	Y	N	I	M	G	W	R	Y	Q	G	I	V	K	A	L	K	E	G
Query Conservation												.	.	.	.	.	.	.	.	.	.	.																					.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.																					.	.																					.	.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.	.
Template Sequence		F	I	Y	L	L	A	S	I	G	I	T	G	T	K	S	V	E	E	A	I	L	Q	D	K	V	K	E	I	R	S	F	T	N	L	P	I	F	V	G	F	G	I	Q	N	N	Q	D	V	K	R	X	R	K	V	A	D	G	V	I	V	G	T	S	.	.	.	.	.	.	.	.	.	I	V	K	C	F	K	Q	G
Template Known Secondary structure									S		S	S																			T	T			S						S	S			S	S							T	T	T	S	S								.	.	.	.	.	.	.	.	.					T	T	S	S
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.										.	.	.	230	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	Q	T	A	Q	K	L	Q	T	E	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	L	D	I	I	X	K	D	I	E	E	I
Template Known Secondary structure													T
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions