Job Description P0A6L4 Confidence 76.36% Date Thu Jan 5 11:03:26 GMT 2012 Rank 288 Aligned Residues 210 % Identity 11% Template c3o1hB_ PDB info PDB header:signaling protein Chain: B: PDB Molecule:periplasmic protein tort; PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao Resolution 3.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.							.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.
Query Sequence		F	D	Q	Q	Q	A	L	D	K	A	S	L	R	R	L	V	Q	F	N	I	Q	Q	G	I	D	G	L	Y	V	G	G	S	T	G	E	A	F	V	Q	S	L	S	E	R	E	Q	V	L	E	I	V	A	.	.	.	.	.	.	E	E	A	K	G	K	I	K	L	I	A	H	V	G	C	V	S	T	A	E	S	Q
Query Conservation																																																						.	.	.	.	.	.
Alig confidence																																																						.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	A	G	G	Y	P	N	K	S	R	Q	E	Q	Q	L	A	L	C	T	Q	W	G	A	N	A	I	I	L	G	T	V	D	P	H	A	Y	E	H	N	L	K	S	W	V	G	N	T	P	V	F	A	T	V	N	Q	L	D	L	D	E	E	Q	S	T	L	L	K	G	E	V	G	V	D	W	Y	W	M	G	Y
Template Known Secondary structure					S	S	T	T															T	T		S							S	S	T	T	T	T	T	T	T	T					T	T							S	S						T	T	T	T	T	S									T
Template Predicted Secondary structure
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.			.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		Q	L	A	A	S	A	K	R	Y	G	F	D	.	.	A	V	S	A	V	T	P	F	Y	Y	P	F	S	F	E	E	H	C	D	H	Y	R	A	I	I	D	S	A	D	G	L	P	M	V	V	Y	N	I	P	A	L	S	G	V	K	L	T	L	D	Q	I	N	T	L	V	T	L	P	G	V	G	A	L	K	Q	T
Query Conservation														.	.
Alig confidence														.	.																																											.	.	.
Template Conservation																																																										.	.	.
Template Sequence		E	A	G	K	Y	L	A	E	R	H	P	K	G	S	G	K	T	N	I	A	L	L	L	G	P	R	T	K	P	V	T	T	G	F	Y	E	A	I	K	N	S	D	I	H	I	V	D	S	F	W	A	D	N	D	K	E	.	.	.	L	Q	R	N	L	V	Q	R	V	I	D	M	G	N	I	D	Y	I	V	G	S
Template Known Secondary structure											S		T	T	S																									S	S	S	S											S				.	.	.												T				S
Template Predicted Secondary structure																																																										.	.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.				.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180				.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.														.										.
Query SS confidence															.	.	.														.										.
Query Sequence		S	G	D	L	Y	Q	M	E	Q	I	R	R	E	.	.	.	H	P	D	L	V	L	Y	N	G	Y	D	E	I	.	F	A	S	G	L	L	A	G	A	.	D	G	G	I	G	S	T	Y	N	I	M	G	W	R	Y	Q	G	I	V	K	A	L	K	E	G	D
Query Conservation															.	.	.														.										.
Alig confidence															.	.	.														.										.
Template Conservation
Template Sequence		A	V	A	I	E	A	A	I	S	E	L	R	S	A	D	K	T	H	D	I	G	L	V	S	V	Y	L	S	H	G	V	Y	R	G	L	L	R	N	K	V	L	F	A	P	T	D	K	M	V	Q	Q	G	R	L	S	V	M	Q	A	A	H	Y	L	R	H	Q
Template Known Secondary structure															T	S		T	T	T	S					S	S			T	T							T	T	S			B																						T	T
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions