 |
Job Description | P0A6L4 | Confidence | 95.27% | Date | Thu Jan 5 11:03:26 GMT 2012 |
Rank | 100 | Aligned Residues | 93 |
% Identity | 14% | Template | c3gndC_ |
PDB info |
PDB header:lyase | Chain: C: PDB Molecule:aldolase lsrf; |
PDBTitle: crystal structure of e. coli lsrf in complex with ribulose-5-phosphate
|
Resolution | 2.90 Å |
|
 |
  |   |
31 | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | |
. | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  | . |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | Q | F | N | I | Q | Q | G | I | D | G | L | Y | V | G | G | S | T | G | E | A | F | V | Q | S | L | S | E | R | E | Q | V | L | E | I | V | A | E | E | A | K | G | K | I | K | L | I | A | H | V | G | C | V | S | T | A | E | S | . |
Q | Q | L | A | A | S | A | K | R | Y | G | F | D | A | V | S | A | V | T | P | F |
Query Conservation |   |
|   |   |
|   |   |   |
|
|   |
|
|   |
|   |
|
|
|
|
|   |   |   |
|
|   |
|
|
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|   |
|
|   |   |   |   |
|   |   |   | . |
|   |   |
|   |   |
|   |   |   |
|
|
|   |
|
|
|   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|
|   |
|
|
|
|
|   |
|   |   |   |   |
| . | . |   |   |   |
|   |   |   |
|   |   |   |   |   |
|   |   |   |
|   |   |   |
|
|
|
|
|   |
|   |   |   |   |   |
|   |
|   |
|   |   |
|
|
|
|
|   |
|
|
|
|
|   |
|
|   |   |   |   |   |
Template Sequence |   |
M | D | D | A | V | R | L | N | S | C | A | V | A | A | Q | V | Y | I | G | . |
. |
S | E | Y | E | H | Q | S | I | K | N | I | I | Q | L | V | D | A | G | M | K | V | G | M | P | T | M | A | V | T | G | V | V | R | D | Q | R | Y | F | S | L | A | T | R | I | A | A | E | M | G | A | Q | I | I | K | T | Y | Y | V | E |
Template Known Secondary structure |   |
 |  |  |  |  |  | T | T |
| S |  |  |  |  |  |  |
| T | T | . | . | S | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| S |  |  |  |  |
|
|
| T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
| . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
127 | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | |
|
. | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . |
  |
  |   |
110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | Y | P | F | S | F | E | E | H | C | D | H | Y | R | A | I | I | D | S | A | D | G | L | P | M | V | V |
Query Conservation |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |   |   |   |   |   |
|
|   |
|
Alig confidence |   |
. | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . | . | . | . | . | . |   |   |   |   |   |
|
|   |   |   |   | . |   |
|
|
|
|
Template Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
K | G | F | E | R | I | V | A | G | C | P | . |
V | P | I | V | I |
Template Known Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | T | T |  |  |  |  |  |  | T |
| S | . | S |
|  |  |  |
Template Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
| . |
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
|
|
|
|
|
209 | 210 | . | . | . | . | . | . | . | . | . | |
220 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|