Return to main results Retrieve Phyre Job Id

Job DescriptionP0A6L4
Confidence100.00%DateThu Jan 5 11:03:26 GMT 2012
Rank23Aligned Residues287
% Identity25%Templatec2v9dB_
PDB info PDB header:lyaseChain: B: PDB Molecule:yage; PDBTitle: crystal structure of yage, a prophage protein belonging to2 the dihydrodipicolinic acid synthase family from e. coli3 k12
Resolution2.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50.........60.........70.........80....
Predicted Secondary structure 





































Query SS confidence 















































































Query Sequence  LRGVMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVS
Query Conservation    

  
  


  
  

       
  
   

 

 
 




   

 


  
     
       

 

    
Alig confidence 















































































Template Conservation    

  
  


  
  

       
   
  

 

 
 
 


   

  

  
            


 

   
Template Sequence  FTGIIPPVSTIFTADGQLDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTN
Template Known Secondary structure  S





B
TTSSB
TT
S
SSTTTTGGGS
TTSS


SS
Template Predicted Secondary structure 





































Template SS confidence 















































































   14.....20.........30.........40.........50.........60.........70.........80.........90...
 
   85....90.........100.........110.........120.........130.........140.........150....... ..160...
Predicted Secondary structure 




























.


Query SS confidence 








































































.





Query Sequence  TAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVT. LPGVGA
Query Conservation 
   
  
  
   


 


  
 
       
      

      

 


 
  

          
  .   
 
Alig confidence 













































.

























.





Template Conservation 
  

  
  
   


 


  
         
      

    . 

 


 
   
   
   
  
    
 
 
Template Sequence  ARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVT. LPVXLYNFPALTGQDLTPALVKTLADSRSNIIG
Template Known Secondary structure  T
S

SSS



S.S

S




TT
Template Predicted Secondary structure 














.














Template SS confidence 















































































   94.....100.........110.........120.........130......... 140.........150.........160.........170..
 
   164.....170..... ....180.........190.........200.........210.........220.........230.........
Predicted Secondary structure 




....










Query SS confidence 











. . . .































































Query Sequence  LKQTSGDLYQME. . . . QIRREHPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTEC
Query Conservation 

 
  
     .... 
        
  
 
      
  
  
      
  
        
   

   
  
   
Alig confidence 











....































































Template Conservation 

 
                      
  
 
         
  
 
       
            

   
  
   
Template Sequence  IKDTIDSVAHLRSXIHTVKGAHPHFTVLCGYDDHLFNTLLLGGDGAISASGNFAPQVSVNLLKAWRDGDVAKAAGYHQTL
Template Known Secondary structure 

S

TT
SSGGGTT



GGGTT
TT
Template Predicted Secondary structure 

















Template SS confidence 















































































   173......180.........190.........200.........210.........220.........230.........240.........250..
 
   240.... .....250.........260.........270.........280.........290..
Predicted Secondary structure  .




















Query SS confidence 




.















































Query Sequence  NKVID. LLIKTGVFRGLKTVLHYMDVVSVPLCRKPFGPVDEKYLPELKALAQQL
Query Conservation       .           
  
   
       
 
   
       
   
  
Alig confidence 




.















































Template Conservation                   
  
   
       
 
   
       
   
  
Template Sequence  LQIPQXYQLDTPFVNVIKEAIVLCGRPVSTHVLPPASPLDEPRKAQLKTLLQQL
Template Known Secondary structure  GGGGGGGSSS
TT




B

TTS



T
Template Predicted Secondary structure 






















Template SS confidence 





















































   253......260.........270.........280.........290.........300......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions