Job Description Q46787 Confidence 97.34% Date Thu Jan 5 12:34:09 GMT 2012 Rank 109 Aligned Residues 152 % Identity 12% Template c3txmA_ PDB info PDB header:hydrolase, protein binding Chain: A: PDB Molecule:26s proteasome regulatory complex subunit p42b; PDBTitle: crystal structure of rpn6 from drosophila melanogaster, gd(3+) complex Resolution 3.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.							.	.	.	.
Predicted Secondary structure																																																																								.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.
Query Sequence		E	T	I	E	I	F	N	N	S	D	E	W	A	N	Q	L	K	H	A	L	S	K	G	E	N	L	A	L	L	H	G	L	T	P	D	I	L	D	R	I	Y	A	Y	A	F	D	Y	H	E	K	G	N	I	T	D	A	E	I	Y	Y	K	F	L	C	I	Y	A	F	E	N	.	.	.	.	.	.	H	E	Y	L
Query Conservation																																																																								.	.	.	.	.	.
Alig confidence																																																																								.	.	.	.	.	.
Template Conservation
Template Sequence		S	L	V	D	M	F	L	D	M	D	A	G	T	G	I	E	V	Q	L	C	K	D	C	I	E	W	A	K	Q	E	K	R	T	F	L	R	Q	S	L	E	A	R	L	I	A	L	Y	F	D	T	A	L	Y	T	E	A	L	A	L	G	A	Q	L	L	R	E	L	K	K	L	D	D	K	N	L	L	V	E	V	Q
Template Known Secondary structure									T	S																				T	T	T																				T																		T	S	S		T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.							.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																												.	.	.	.	.	.																			.
Query SS confidence																												.	.	.	.	.	.																			.
Query Sequence		K	D	F	A	S	V	C	Q	P	K	K	K	Y	Q	Q	A	Y	D	L	Y	K	L	S	Y	N	Y	.	.	.	.	.	.	F	P	Y	D	D	Y	S	V	I	Y	R	M	G	Q	C	Q	I	G	.	A	K	N	I	D	N	A	M	Q	C	F	Y	H	I	I	N	N	C	E	D	D	S	V	K	S	K	A	Q	A
Query Conservation																												.	.	.	.	.	.																			.
Alig confidence																												.	.	.	.	.	.																			.
Template Conservation
Template Sequence		L	L	E	S	K	T	Y	H	A	L	S	N	L	P	K	A	R	A	A	L	T	S	A	R	T	T	A	N	A	I	Y	C	P	P	K	V	Q	G	A	L	D	L	Q	S	G	I	L	H	A	A	D	E	R	D	F	K	T	A	F	S	Y	F	Y	E	A	F	E	G	F	D	S	V	D	S	V	K	A	L	T	S
Template Known Secondary structure											T	T																			S																					T	T																		T	T	T
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		151	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	E	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	K	Y	M	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions