Job Description Q46787 Confidence 96.71% Date Thu Jan 5 12:34:09 GMT 2012 Rank 112 Aligned Residues 124 % Identity 12% Template c3mv2A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of a-cop in complex with e-cop Resolution 2.90 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70					.	.	.	.	.															.	.	.	.	80	.	.	.	.	.	.	.					.	.	90	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Query SS confidence																																			.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Query Sequence		D	I	L	D	R	I	Y	A	Y	A	F	D	Y	H	E	K	G	N	I	T	D	A	E	I	Y	Y	K	F	L	C	I	Y	A	.	.	.	.	F	E	N	H	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	L	K	D	F	A	S	V	C	Q	P	K	.	.	.	.	K	K	Y	Q	Q	A	Y	D
Query Conservation																																			.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Alig confidence																																			.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Conservation
Template Sequence		D	V	V	N	E	K	M	N	E	G	Y	K	N	F	K	L	N	K	P	D	I	A	I	E	C	F	R	E	A	I	Y	R	I	T	L	L	M	V	D	D	A	E	D	E	K	L	A	H	K	I	L	E	T	A	R	E	Y	I	L	G	L	S	I	E	L	E	R	R	S	L	K	E	G	N	T	V	R	M	L	E
Template Known Secondary structure																	T	T																		T			B		S	S																												T			T	T
Template Predicted Secondary structure
Template SS confidence
		988	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.
				96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	L	Y	K	L	S	Y	N	Y	F	P	Y	D	D	Y	S	V	I	Y	R	M	G	Q	C	Q	I	G	A	K	N	I	D	N	A	M	Q	C	F	Y	H	I	I	N	N	C	E	D	D	S	V	K	S	K	A	Q	A	Y	I	E	L	L	N	D	N	S	E	D
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		L	A	A	Y	F	T	K	A	K	L	S	P	I	H	R	T	N	A	L	Q	V	A	M	S	Q	H	F	K	H	K	N	F	L	Q	A	S	Y	F	A	G	E	F	L	K	I	I	S	S	G	P	R	A	E	Q	A	R	K	I	K	N	K	A	D	S	M	A	S	D
Template Known Secondary structure						G	G	G	S																					T	T														T	T			S	S															T	S
Template Predicted Secondary structure
Template SS confidence
		1068	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions