Job Description Q46787 Confidence 97.66% Date Thu Jan 5 12:34:09 GMT 2012 Rank 107 Aligned Residues 127 % Identity 17% Template c3mkrB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of yeast alpha/epsilon-cop subcomplex of the copi2 vesicular coat Resolution 2.60 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70					.	.	.	.	.															.	.	.	.	80	.	.	.	.	.	.	.								.	.
Predicted Secondary structure																																						.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Query Sequence		L	T	P	D	I	L	D	R	I	Y	A	Y	A	F	D	Y	H	E	K	G	N	I	T	D	A	E	I	Y	Y	K	F	L	C	I	Y	A	.	.	.	.	F	E	N	H	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	L	K	D	F	A	S	V	C	Q	P	K	.	.	.	.	.	.	.	K	K
Query Conservation																																						.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	L	N	D	L	I	Q	R	L	Q	L	C	Y	Q	L	T	T	V	G	K	F	E	E	A	V	E	K	F	R	S	I	L	L	S	V	P	L	L	V	V	D	N	K	Q	E	I	A	E	A	Q	Q	L	I	T	I	C	R	E	Y	I	V	G	L	S	M	E	T	E	R	K	K	L	P	K	E	T	L	E	Q
Template Known Secondary structure																				T	T																G	G	G					S																												T	T	S				S
Template Predicted Secondary structure
Template SS confidence
		1001	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080
		90	.	.	.	.	.			.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure								.	.																							.
Query SS confidence								.	.																							.
Query Sequence		Y	Q	Q	A	Y	D	.	.	L	Y	K	L	S	Y	N	Y	F	P	Y	D	D	Y	S	V	I	Y	R	M	G	Q	.	C	Q	I	G	A	K	N	I	D	N	A	M	Q	C	F	Y	H	I	I	N	N	C	E	D	D	S	V	K	S	K	A	Q	A	Y	I	E	L	L	N	D	N	S	E	D	N
Query Conservation								.	.																							.
Alig confidence								.	.											.												.
Template Conservation																				.
Template Sequence		Q	K	R	I	C	E	M	A	A	Y	F	T	H	S	N	L	Q	P	.	V	H	M	I	L	V	L	R	T	A	L	N	L	F	F	K	L	K	N	F	R	T	A	A	A	F	A	R	R	L	L	E	L	G	P	K	P	E	V	A	Q	Q	T	R	K	I	L	S	A	C	E	K	N	P	T	D	A
Template Known Secondary structure													T	T	S					.																	T	T	B														T																				S			B	S
Template Predicted Secondary structure																				.
Template SS confidence
		1081	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.		.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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