Job Description Q46787 Confidence 90.00% Date Thu Jan 5 12:34:09 GMT 2012 Rank 122 Aligned Residues 98 % Identity 9% Template c3mkqB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat Resolution 2.50 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Y	H	E	K	G	N	I	T	D	A	E	I	Y	Y	K	F	L	C	I	Y	A	F	E	N	H	E	Y	L	K	D	F	A	S	V	C	Q	P	K	K	K	Y	Q	Q	A	Y	D	L	Y	K	L	S	Y	N	Y	F	P	Y	D	D	Y	S	V	I	Y	R	M	G	Q	C	Q	I	G	A	K	N	I	D	N	A
Query Conservation
Alig confidence																				.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Template Sequence		L	A	L	E	Y	G	N	L	D	A	A	L	D	E	A	K	K	L	.	.	.	.	.	N	D	S	I	T	W	E	R	L	I	Q	E	A	L	A	Q	G	N	A	S	L	A	E	M	I	Y	Q	T	Q	.	.	.	.	.	.	.	.	.	H	S	F	D	K	L	S	F	L	Y	L	V	T	G	D	V	N	K	L
Template Known Secondary structure						T	T													.	.	.	.	.																T	T												T	.	.	.	.	.	.	.	.	.	T													T
Template Predicted Secondary structure																				.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Template SS confidence
		655	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.						.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.										.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.							.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																						.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.
Query Sequence		M	Q	C	F	Y	H	I	I	N	N	C	E	D	D	S	V	K	S	K	A	.	.	.	.	.	.	Q	A	Y	I	E	L	L	N	D	N	S	E
Query Conservation																						.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.
Template Conservation
Template Sequence		S	K	M	Q	N	I	A	Q	T	R	E	D	F	G	S	M	L	L	N	T	F	Y	N	N	S	T	K	E	R	S	S	I	F	A	E	G	G	S
Template Known Secondary structure											T	T													T												T	T
Template Predicted Secondary structure
Template SS confidence
		721	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions