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Job DescriptionQ46787
Confidence98.95%DateThu Jan 5 12:34:09 GMT 2012
Rank95Aligned Residues124
% Identity21%Templatec3ceqB_
PDB info PDB header:motor protein, transport proteinChain: B: PDB Molecule:kinesin light chain 2; PDBTitle: the tpr domain of human kinesin light chain 2 (hklc2)
Resolution2.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   11........20.........30...... ...40.........50.........60.........70......
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Query Sequence  NSDEWANQLKHALSKGENLALLHGLT. PDILDRIYAYAFDYHEKGNITDAEIYYKFLCIYAFENHEY. . . . . . . . . . . . .
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Template Sequence  PRGSAVPLCKQALED. . . LEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA
Template Known Secondary structure 
TTT...
SSSTT

TT
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   213......220....... ..230.........240.........250.........260.........270.........280.........
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK
Template Known Secondary structure  T

TT
TTT
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TT
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   290.........300.........310.........320.........330.........340.........350.........360.........
 
   77..80.........90.........100.... ....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LKDFASVCQPKKKYQQAYDLYKLSYNYF. . . . . . PYDD
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Template Sequence  NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP. TV
Template Known Secondary structure  T

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SSS

TT



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   370.........380.........390.........400.........410.........420.........430.........440...... ..
 
   109110.........120.........130........
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Query Sequence  YSVIYRMGQCQIGAKNIDNAMQCFYHIINN
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Template Sequence  NTTLRSLGALYRRQGKLEAAHTLEDCASRN
Template Known Secondary structure  TT
T
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   449450.........460.........470........
 
Download:Text version

No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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