Job Description Q46787 Confidence 41.08% Date Thu Jan 5 12:34:09 GMT 2012 Rank 135 Aligned Residues 62 % Identity 13% Template c2v6xA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: stractural insight into the interaction between escrt-iii2 and vps4 Resolution 1.98 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.					.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																																								.	.	.	.
Query SS confidence																																																								.	.	.	.
Query Sequence		Y	Q	Q	A	Y	D	L	Y	K	L	S	Y	N	Y	F	P	Y	D	D	Y	S	V	I	Y	R	M	G	Q	C	Q	I	G	A	K	N	I	D	N	A	M	Q	C	F	Y	H	I	I	N	N	C	E	D	D	S	.	.	.	.	V	K	S	K	A	Q	A	Y	I	E	L	L	N	D	N	S	E
Query Conservation																																																								.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.																				.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.
Template Sequence		L	T	K	G	I	E	L	V	Q	K	A	I	D	L	D	T	A	T	Q	Y	E	E	A	Y	T	A	.	.	.	.	.	.	.	.	.	Y	Y	N	G	L	D	Y	L	X	L	A	L	K	Y	E	K	N	P	K	S	K	D	L	I	R	A	K	F	T	E	Y	L	N	R	A	E	Q	L	K	K
Template Known Secondary structure																		T	T									.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.										.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions