Job Description P0AA49 Confidence 1.09% Date Thu Jan 5 11:11:55 GMT 2012 Rank 29 Aligned Residues 145 % Identity 8% Template c3ddlB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:xanthorhodopsin; PDBTitle: crystallographic structure of xanthorhodopsin, a light-2 driven ion pump with dual chromophore Resolution 1.90 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.			.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																			.	.
Query SS confidence																																			.	.
Query Sequence		M	L	L	G	Y	F	S	G	R	R	E	T	F	S	E	D	Q	A	R	A	F	N	K	L	V	L	N	Y	A	L	P	A	A	.	.	L	F	V	S	I	T	R	A	N	R	E	M	I	F	A	D	T	R	L	T	L	V	S	L	V	V	I	V	G	C	F	F	F	S	W	F	G	C	Y	K	F	F	K	R	T
Query Conservation																																			.	.
Alig confidence																																			.	.
Template Conservation
Template Sequence		L	L	T	V	E	L	V	L	V	M	G	L	P	K	N	E	R	G	P	L	A	A	K	L	G	F	L	A	A	L	M	I	V	L	G	Y	P	G	E	V	S	E	N	A	A	L	F	G	T	R	G	L	W	G	F	L	S	T	I	P	F	V	W	I	L	Y	I	L	F	T	Q	L	G	D	T	I	Q	R	Q	S
Template Known Secondary structure											S																														T		S				S	S	S																						T	T	T						T	S
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.						.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																			.	.	.	.	.
Query SS confidence																																			.	.	.	.	.
Query Sequence		H	A	E	A	A	V	C	A	L	I	A	G	S	P	T	I	G	F	L	G	F	A	V	L	D	P	I	Y	G	D	S	V	S	.	.	.	.	.	T	G	L	V	V	A	I	I	S	I	I	V	N	A	I	T	I	P	I	G	L	Y	L	L	N	P	S	S	G	A	D	G	K	K	N
Query Conservation																																			.	.	.	.	.
Alig confidence																													.						.	.	.	.	.
Template Conservation																													.
Template Sequence		S	R	V	S	T	L	L	G	N	A	R	L	L	L	L	A	T	W	G	F	Y	P	I	A	Y	M	I	.	P	M	A	N	T	P	G	T	I	V	A	L	Q	V	G	Y	T	I	A	D	V	L	A	K	A	G	Y	G	V	L	I	Y	N	I	A	K	A	K	S	E	E	E	G	F	N
Template Known Secondary structure																												T	.	T																																									T	T
Template Predicted Secondary structure																													.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions