Job Description P0AA49 Confidence 0.78% Date Thu Jan 5 11:11:55 GMT 2012 Rank 46 Aligned Residues 92 % Identity 8% Template c2jagA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:halorhodopsin; PDBTitle: l1-intermediate of halorhodopsin t203v Resolution 1.93 Å

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		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.					.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.				.	.	.	.
Query SS confidence																																																									.	.				.	.	.	.
Query Sequence		R	L	T	L	V	S	L	V	V	I	V	G	C	F	F	F	S	W	F	G	C	Y	K	F	F	K	R	T	H	A	E	A	A	V	C	A	L	I	A	G	S	P	T	I	G	F	L	G	F	A	V	L	D	P	I	.	.	Y	G	D	.	.	.	.	S	V	S	T	G	L	V	V	A	I	I	S	I	I	V	N
Query Conservation																																																									.	.				.	.	.	.
Alig confidence																																																									.	.				.	.	.	.
Template Conservation
Template Sequence		W	A	F	Y	A	I	S	C	A	F	F	V	V	V	L	S	A	L	V	T	D	W	A	A	S	A	S	S	A	G	T	A	E	I	F	D	T	L	R	V	L	V	V	V	L	W	L	G	Y	P	I	V	W	A	V	G	V	E	G	L	A	L	V	Q	S	V	G	A	T	S	W	A	Y	S	V	L	D	V	F	A
Template Known Secondary structure																					T									T	T																										S	T	T	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	T	I	P	I	G	L	Y	L	L	N	P	S	S	G	A	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	Y	V	F	A	F	I	L	L	R	W	V	A	N	N	E	R	T
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions