Job Description Q47153 Confidence 100.00% Date Thu Jan 5 12:36:28 GMT 2012 Rank 2 Aligned Residues 342 % Identity 31% Template c3mydA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:flagellar biosynthesis protein flha; PDBTitle: structure of the cytoplasmic domain of flha from helicobacter pylori Resolution 2.40 Å

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		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	V	S	W	E	T	I	P	L	I	E	P	I	S	L	S	L	G	Y	K	L	V	A	L	V	D	K	A	Q	G	N	P	L	T	Q	R	I	R	G	V	R	Q	V	I	S	D	G	N	G	V	L	L	P	E	I	R	I	R	E	N	F	R	L	K	P	S	Q	Y	A	I	F	I	N	G	I	K	A	D	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	Q	A	I	D	E	V	L	K	I	E	F	L	E	L	A	L	G	Y	Q	L	I	S	L	A	D	M	K	Q	G	G	D	L	L	E	R	I	R	G	I	R	K	K	I	A	S	D	Y	G	F	L	M	P	Q	I	R	I	R	D	N	L	Q	L	P	P	T	H	Y	E	I	K	L	K	G	I	V	I	G	E
Template Known Secondary structure																					G	G	G	G	G	G	T		G	G	G	T									T																						T	T	S		T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	I	P	A	D	K	L	M	A	L	P	S	S	E	T	Y	G	E	I	D	G	V	Q	G	N	D	P	A	Y	G	M	P	V	T	W	I	Q	A	A	Q	K	A	K	A	L	N	M	G	Y	Q	V	I	D	S	A	S	V	I	A	T	H	V	N	K	I	V	R	S	Y	I	P	D	L	F	N	Y	D	D	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	M	V	M	P	D	K	F	L	A	M	N	T	G	F	V	N	R	E	I	E	G	I	P	T	K	E	P	A	F	G	M	D	A	L	W	I	D	A	K	N	K	E	E	A	I	I	Q	G	Y	T	I	I	D	P	S	T	V	I	A	T	H	T	S	E	L	V	K	K	Y	A	E	D	F	I	T	K	D	E	V
Template Known Secondary structure						T	T	S						S	S			S	S				S						T	T	T									G	G	G							T	T																					T	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		465	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		T	Q	L	H	N	R	L	S	S	T	A	P	R	L	A	E	D	L	S	A	A	L	N	Y	S	Q	L	L	K	V	Y	R	A	L	L	T	E	G	V	S	L	R	D	I	V	T	I	A	T	V	L	V	A	S	S	T	V	.	T	K	D	H	I	L	L	A	A	D	V	R	L	A	L	R	R	S	I	T	H	P
Query Conservation																																																											.
Alig confidence																			.																																								.
Template Conservation																			.
Template Sequence		K	S	L	L	E	R	L	A	K	D	Y	P	T	I	V	E	E	.	S	K	K	I	P	T	G	A	I	R	S	V	L	Q	A	L	L	H	E	K	I	P	I	K	D	M	L	T	I	L	E	T	I	T	D	I	A	P	L	V	Q	N	D	V	N	I	L	T	E	Q	V	R	A	R	L	S	R	V	I	T	N	A
Template Known Secondary structure										T	T								.	G	G	G	S															T	T																	G	G	G	G	T	T												T
Template Predicted Secondary structure																			.
Template SS confidence
		545	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.		.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.
		470	.	.		.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.		.	.	.	.	540	.	.	.	.	.	.	.
Predicted Secondary structure					.																																																																.
Query SS confidence					.																																																																.
Query Sequence		F	V	R	.	K	Q	E	L	T	V	Y	T	L	N	N	E	L	E	N	L	L	T	N	V	V	N	Q	A	Q	Q	G	G	K	V	M	L	D	S	V	P	V	D	P	N	M	L	N	Q	F	Q	S	T	M	P	Q	V	K	E	Q	M	K	A	A	G	K	D	P	.	V	L	L	V	P	P	Q	L	R	P	L	L
Query Conservation					.																																																																.
Alig confidence					.																																	.	.	.	.	.																											.
Template Conservation																																						.	.	.	.	.
Template Sequence		F	K	S	E	D	G	R	L	K	F	L	T	F	S	T	D	S	E	Q	F	L	L	N	K	L	R	E	N	G	T	S	K	S	L	L	L	.	.	.	.	.	N	V	G	E	L	Q	K	L	I	E	G	V	S	E	E	A	M	K	V	L	Q	K	G	I	A	P	V	I	L	I	V	E	P	N	L	R	K	A	L
Template Known Secondary structure					T	T	S																		T					T	T							.	.	.	.	.																						T	T			S
Template Predicted Secondary structure																																						.	.	.	.	.
Template SS confidence
		624	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.						660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.
		548	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	Y	A	R	L	F	A	P	G	L	H	V	L	S	Y	N	E	V	P	D	E	L	E	L	K	I	M	G	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	N	Q	M	E	Q	A	R	I	D	V	V	V	L	S	H	A	E	L	D	P	N	S	N	F	E	A	L	G	T	I
Template Known Secondary structure									T								G	G	G			T	T	S
Template Predicted Secondary structure
Template SS confidence
		699	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions