Job Description Q47153 Confidence 100.00% Date Thu Jan 5 12:36:28 GMT 2012 Rank 4 Aligned Residues 307 % Identity 31% Template c3mixA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:flagellar biosynthesis protein flha; PDBTitle: crystal structure of the cytosolic domain of b. subtilis flha Resolution 2.30 Å

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		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	R	T	I	T	E	T	S	E	Q	Q	V	S	W	E	T	I	P	L	I	E	P	I	S	L	S	L	G	Y	K	L	V	A	L	V	D	K	A	Q	G	N	P	L	T	Q	R	I	R	G	V	R	Q	V	I	S	D	G	N	G	V	L	L	P	E	I	R	I	R	E	N	F	R	L	K	P	S	Q	Y	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	E	A	E	V	D	E	L	K	S	P	E	S	V	V	Q	L	L	H	I	D	P	I	E	F	E	F	G	Y	G	L	I	P	L	A	D	A	N	Q	G	G	D	L	L	D	R	I	V	M	I	R	R	Q	L	A	L	E	L	G	L	V	I	P	V	V	R	I	R	D	N	I	A	L	Q	P	N	E	Y	R
Template Known Secondary structure								S				S					G	G	G	S				S							G	G	G						S	S	S																				S												T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure
Query SS confidence
Query Sequence		I	F	I	N	G	I	K	A	D	E	A	D	I	P	A	D	K	L	M	A	L	P	S	S	E	T	Y	G	E	I	D	G	V	Q	G	N	D	P	A	Y	G	M	P	V	T	W	I	Q	A	A	Q	K	A	K	A	L	N	M	G	Y	Q	V	I	D	S	A	S	V	I	A	T	H	V	N	K	I	V	R	S	Y
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	I	K	G	N	E	V	A	K	G	E	L	L	L	D	H	Y	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	V	D	P	A	S	V	V	S	T	H	I	T	E	K	I	K	Q	H
Template Known Secondary structure					T	T										T	T			B		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			B
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420																																									.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.		.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		I	P	D	L	F	N	Y	D	D	I	T	Q	L	H	N	R	L	S	S	T	A	P	R	L	A	E	D	L	.	S	A	A	L	N	Y	S	Q	L	L	K	V	Y	R	A	L	L	T	E	G	V	S	L	R	D	I	V	T	I	A	T	V	L	V	A	S	S	T	V	T	K	D	H	I	L	L	A	A	D	V	R
Query Conservation																														.
Alig confidence																														.
Template Conservation
Template Sequence		A	H	E	L	I	G	R	Q	E	T	K	Q	L	I	D	H	L	K	E	S	Y	P	V	L	V	E	E	V	T	P	N	P	L	S	V	G	D	I	Q	K	V	L	A	K	L	L	K	E	K	V	S	I	R	N	L	V	T	I	F	E	T	L	A	D	Y	G	K	L	T	T	D	S	D	L	L	T	E	Y	T	R
Template Known Secondary structure																														T	T	T	T																T	T																	T	T	T
Template Predicted Secondary structure
Template SS confidence
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
		460	.	.	.	.	.	.	.	.	.	470	.	.		.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		L	A	L	R	R	S	I	T	H	P	F	V	R	.	K	Q	E	L	T	V	Y	T	L	N	N	E	L	E	N	L	L	T	N	V	V	N	Q	A	Q	Q	G	G	K	V	M	L	D	S	V	P	V	D	P	N	M	L	N	Q	F	Q	S	T	M	P	Q	V	K	E	Q	M	K	A	A	G	K	D	P	V	L	L
Query Conservation															.
Alig confidence															.																							.	.	.	.	.	.					.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.					.	.	.	.	.
Template Sequence		Q	A	L	A	K	Q	I	T	A	Q	F	A	K	E	N	E	V	L	K	V	V	T	C	S	G	R	V	E	K	A	I	A	D	G	V	Q	.	.	.	.	.	.	Y	L	S	L	.	.	.	.	.	E	P	D	I	S	E	S	I	V	R	S	V	A	K	E	A	E	Q	L	S	L	R	Q	E	T	A	I	L	L
Template Known Secondary structure				T											T	T	S					B														B		.	.	.	.	.	.		B			.	.	.	.	.																						T	T
Template Predicted Secondary structure																																						.	.	.	.	.	.					.	.	.	.	.
Template SS confidence
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.							.	.	.	600						.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.
		539	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	P	Q	L	R	P	L	L	A	R	Y	A	R	L	F	A	P	G	L	H	V	L	S	Y	N	E	V	P	D	E	L	E	L	K	I	M	G	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	S	P	P	V	R	M	Y	V	K	Q	L	L	E	R	Y	F	P	D	L	P	V	L	S	Y	N	E	L	E	A	N	V	E	V	Q	S	I	G	V	V
Template Known Secondary structure															T	T	T		T	T						G	G	G	S		T	T						S
Template Predicted Secondary structure
Template SS confidence
		636	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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