Job Description Q47153 Confidence 9.95% Date Thu Jan 5 12:36:28 GMT 2012 Rank 78 Aligned Residues 130 % Identity 15% Template c3gz6A_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of shewanella oneidensis nrtr complexed2 with a 27mer dna Resolution 2.90 Å

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		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.				.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure																					.	.	.
Query SS confidence																					.	.	.
Query Sequence		R	G	V	R	Q	V	I	S	D	G	N	G	V	L	L	P	E	I	R	.	.	.	I	R	E	N	F	R	L	K	P	S	Q	Y	A	I	F	I	N	G	I	K	A	D	E	A	D	I	P	A	D	K	L	M	A	L	P	S	S	E	T	Y	G	E	I	D	G	V	Q	G	N	D	P	A	Y	G	M	P	V	T
Query Conservation																					.	.	.
Alig confidence																					.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Template Sequence		Q	T	V	L	R	K	L	A	E	K	T	A	V	V	P	P	Y	I	E	Q	L	C	T	V	G	N	N	S	R	D	A	R	G	W	S	V	T	V	C	.	.	.	.	.	.	.	.	.	.	.	.	Y	T	A	L	M	S	Y	Q	A	C	Q	.	.	.	.	.	.	.	.	I	Q	I	A	S	V	S	D	V	K
Template Known Secondary structure													S	S			S											S	S	S		T	T	S							.	.	.	.	.	.	.	.	.	.	.	.							S					.	.	.	.	.	.	.	.					S		S	S
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.													.	.	.	.	110	.	.	.	.	.	.									.	.	.	120	.	.	.	.	.	.
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.		.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		W	I	Q	A	A	Q	K	A	K	A	L	N	M	G	Y	Q	V	I	D	S	A	S	V	I	A	T	H	V	N	K	I	V	R	S	Y	I	P	D	L	F	N	Y	D	D	I	T	Q	L	H	N	R	L	S	S	T	A	P	R	L	A	E	D	L	.	S	A	A	L	N	Y	S	Q	L	L	K	V	Y	R	A	L
Query Conservation																																																																	.
Alig confidence															.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation															.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	W	P	L	A	D	V	L	Q	M	P	L	A	.	.	.	.	F	D	H	L	Q	L	I	E	Q	A	R	E	R	L	T	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	A	L	Y	S	L	V	P	G	F	A	L	S	E	P	F	T	L	P	E	L	Q	H	V	H	E	V	L
Template Known Secondary structure									T	T	S		B	S	.	.	.	.	T	T															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							G	G	G	G	G	S		S	S	B
Template Predicted Secondary structure															.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.					140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.																				.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	E	G	V	S	L	R	D	I	V	T	I	A	T	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	K	P	I	Q	G	K	S	F	R	R	R	V	E	Q	A
Template Known Secondary structure		T	T	S
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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